Query= MSMg01no360_h11.b1 MSMg01no360_h11.b1 CHROMAT_FILE:
MSMg01no360_h11.b1 PHD_FILE: MSMg01no360_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:13 2005
(447 letters)
>mm_chr10_117035996_117036842
Length = 847
Score = 646 bits (334), Expect = 0.0
Identities = 401/430 (93%), Gaps = 19/430 (4%)
Strand = Plus / Minus
Query: 32 aaaaaaaaaaaa-aaaaaaccaaacc-aatcaaacaaacaaacaaacaaacaaacaaaaa 89
|||||||||||| ||||||||||||| || ||| ||||||||||||||| ||| |||||
Sbjct: 803 aaaaaaaaaaaacaaaaaaccaaaccaaaccaaccaaacaaacaaacaa--aaa-aaaaa 747
Query: 90 gagttgccttggttggtcatggtgtctgttcacagcagtaaaaccttagctaagacagat 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gagttgccttggttggtcatggtgtctgttcacagcagtaaaaccttagctaagacagat 687
Query: 150 taagacaaatatatgtttacacagt--------aaaa--aaaaaaaaactaaaggctttt 199
||||| ||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 686 taagagaaatatatgtttacacagtgaaaaaaaaaaaccaaaaaaaaactaaaggctttt 627
Query: 200 ttaagtgataaagagcaaaataagttatttaaggcatatata-aa-atggtatacgttat 257
|||||||||||||||| |||||||||||||||| |||||| || |||||||||| ||
Sbjct: 626 ttaagtgataaagagccgaataagttatttaagg--tatatagaagatggtatacggtaa 569
Query: 258 tttagtgaataagaattaaagataatgtatatgatgtttgtttctaaggtctaaaattag 317
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 568 tatagtgaataagaattaaagataatgtatatgatgtttgtttctaaggtctaagattag 509
Query: 318 caattacaaagtgactaggtaactgtatgtcaaatcaaggttaaatgcttctcaggtggt 377
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 508 caattacaaagtgactaggtaactgtatgtcaaatcaaggttagatgcttctcaggtggt 449
Query: 378 ggcttgcacgactctctttaactctaccaggctatcacccaccattcctgtctgtgtgtc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggcttgcacgactctctttaactctaccaggctatcacccaccattcctgtctgtgtgtc 389
Query: 438 attggtggct 447
||||||||||
Sbjct: 388 attggtggct 379
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_h11.g1 MSMg01no360_h11.g1 CHROMAT_FILE:
MSMg01no360_h11.g1 PHD_FILE: MSMg01no360_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:13 2005
(478 letters)
>mm_chr10_116859888_116860764
Length = 877
Score = 832 bits (430), Expect = 0.0
Identities = 465/478 (97%), Gaps = 5/478 (1%)
Strand = Plus / Plus
Query: 1 aacaggggtaatttcccagggaacacaccacagcccaagcttttgatctgctcatttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaggggtaatttcccagggaacacaccacagcccaagcttttgatctgctcatttatt 260
Query: 61 ttcctttgaaaggagtgaccagtaaaataaataatcttaaaaaaaaaagaaagaaaggag 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ttcctttgaaaggagtgaccagtaaaataaataatctt-taaaaaaaagaaagaaaggag 319
Query: 121 tgaccatattattaaacattttttttaaaaataaagatttactttattcaagtgtatgat 180
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 320 tgaccatattattaaaca-tttttttaaa---aaagatttactttattcaagtgtatgag 375
Query: 181 tgttttgcctgcatgtatgtatgtgtaccaatgtgtgcctggtgtcctaggatgccaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgttttgcctgcatgtatgtatgtgtaccaatgtgtgcctggtgtcctaggatgccaaac 435
Query: 241 aaaggttttttactccctgatactggagttgtggtcagctttgagctgttgtatgggtgc 300
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaaggtgttagactccctgatactggagttgtggtcagctttgagctgttgtatgggtgc 495
Query: 301 caagaactgaacccaggccttccataagagaaagaagtgttcttaaccactgagacgtcg 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 496 caagaactgaacccaggccttccacaagagaaagaagtgttcttaaccactgagacgtcg 555
Query: 361 tgtggctggctcatatacctgcctgctgaacttcactagccagcaggccacatgcgcctc 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 556 tgtggctggctcatatacctgcctgctgaacttcattagccagcaggccacatgcgcctc 615
Query: 421 tggactctctgtcttgtacagggattctagaatagatgccctaactcaatggctacca 478
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 616 tggactctctgtcttgtacagggattctggaatagatgccctaactcaatggctacca 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 877
Length adjustment: 10
Effective length of query: 468
Effective length of database: 867
Effective search space: 405756
Effective search space used: 405756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
