BAC Information

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BAC

Clone NameMSMg01-360J21
Chromosome10 (Build37)
Map Location 94,521,357 - 94,521,777
singlet/doubletsinglet
Overlap genenone
Upstream geneFgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1
Downstream geneCradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119, Eea1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360J21.T7 (MSMg01no360_j21.b1)MSMg01-360J21.TJ (MSMg01no360_j21.g1)
ACCAG469749AG469750
length753794
length of high quality
(start - end)		420 (69 - 488)221 (74 - 294)
definitionCHROMAT_FILE: MSMg01no360_j21.b1 PHD_FILE: MSMg01no360_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:25 2005CHROMAT_FILE: MSMg01no360_j21.g1 PHD_FILE: MSMg01no360_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGA
ATTCCAGTGGGTTTCACTTAGCGCCATTAACGCTGTCTACAGCTTACAGA
CACTCCCCCGACTGATCATTTGAAATCGCCTTTCCTTTTTAGCGGACGCA
AACATCACAGTCACTAATAAAAGGTTTAAATTCTTTTTGCACCAGTGAAG
AATTGGACTCTTGCCCCATGGACTCTCATTTATTAAAGGAAGGATGAAAG
AACCATAAGGCACAGCATCTCGTATGCATATTTTATTCCCTTAGAAATCG
CTGTGGAAATGAACCTTCTCCTGGGGTAGTTATTTCATTTCTTGTCTTTG
ATATATTAGAGGAGGTTTAACTGTCTTTCCCCAGTTACAAGATATTCATT
AGGCAAAGTGGAGTGGCCGAAGGTCAAGAAGACTGTGTCTAANACCCACT
TTCAAAGCTCAATGATGAAACTTGGCAGGGATTCCCAACTGGGGATTCGG
GAAGGTCAGAGACTGTATGTGGCTGCTTTCTGTGCAATGTACTTCAAAGA
AGACTAACGTGGCCCCAAGTTTCCTTTTAAAAAAAAAAAAAAAAGAAATT
GTTTTAAAAAAAATTCTGTTCCAAACGCTTAAAAACCCTGCGCAAGGCCG
AGAAAATTTCCGTGGGATTTCAAGAAAAAAAGGGGGTTAAAAAAACCCTT
GACCCCCGGCTGAAACCTGTCAAAAAAATAAAAAATGGGAATGTTGTATT
GTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAATGCCTGCTTCTCTTTCTTTTCTTT
CTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCT
CTTTCTTTCTCTCTCTTTCTTCCTTCCTTCTCTCTCTCCCTTCCTTCCTT
CCTTCCTCCCTTCCCTTCCCTCCCCTCCCCTCCCCTCCCCTCGCGTCCGG
TCCCGGCGCGTTCGTTCCGTCTTTTCTTTCTTCCTTCCGTCCTTCCGGGC
TTCCGTCGGTCCGTTCGTTCCCGCCTTGGGGGGGGGGGTGGGGGCTCTCG
CGCGGGGGGTCTGGGGGGACGGTAGTGTCGGATTCTCTGGGGCGATCGCT
GAGTTGAGAATGATGGGTAAATGAAGGGGGGGATGAGCGAGTGAGAAGAA
AGGGGAGAAATTTGGGGGGGGAGTGAGGGAGGGGGGAAAGGAAAGAAACT
AAACGAAGAGGTTTGAAAGGGAGAAAATGTCAGGAAAGAGTAACAAATGG
AGAGAGCAGGAGTAGGAAAAAGAGAGGGGAGGAAATGAAAAACGAAAAGA
AAGAATAGAATGGAAATGATAGAAGTAGGTGAGAGGAAATTGAAGAATAG
GAGACAGGAGTTGAGAGAAAAAAGAGAAAAGGAAGGTAAATGAAAGAAGA
TTAGGTAAAAAATAAATATATGAGAGATAAAAAACAAAAACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_j21.b1 MSMg01no360_j21.b1 CHROMAT_FILE:
MSMg01no360_j21.b1 PHD_FILE: MSMg01no360_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:25 2005
         (420 letters)



>mm_chr10_94521157_94521977
          Length = 821

 Score =  779 bits (403), Expect = 0.0
 Identities = 417/422 (98%), Gaps = 3/422 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagcgccattaacgctgtctacagcttacagacactcccccgactgatcatttgaaatcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagcgccattaacgctgtctacagcttacagacactcccccgactgatcatttgaaatcg 260

                                                                       
Query: 61  cctttcctttttagcggacgcaaacatcacagtcactaataaaaggtttaaattcttttt 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctttcctttttagcggacccaaacatcacagtcactaataaaaggtttaaattcttttt 320

                                                                       
Query: 121 gcaccagtgaagaattggactcttg-cccca-tggactctcatttattaaaggaaggatg 178
           ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||
Sbjct: 321 gcaccagtgaagaattggactcttgcccccact-gactctcatttattaaaggaaggatg 379

                                                                       
Query: 179 aaagaaccataaggcacagcatctcgtatgcatattttattcccttagaaatcgctgtgg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaagaaccataaggcacagcatctcgtatgcatattttattcccttagaaatcgctgtgg 439

                                                                       
Query: 239 aaatgaaccttctcctggggtagttatttcatttcttgtctttgatatattagaggaggt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaatgaaccttctcctggggtagttatttcatttcttgtctttgatatattagaggaggt 499

                                                                       
Query: 299 ttaactgtctttccccagttacaagatattcattaggcaaagtggagtggccgaaggtca 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttaactgtctttccccagttacaagatattcattaggcaaagtggagtggccgaaggtca 559

                                                                       
Query: 359 agaagactgtgtctaanacccactttcaaagctcaatgatgaaacttggcagggattccc 418
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agaagactgtgtctaaaacccactttcaaagctcaatgatgaaacttggcagggattccc 619

             
Query: 419 aa 420
           ||
Sbjct: 620 aa 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 821
Length adjustment: 9
Effective length of query: 411
Effective length of database: 812
Effective search space:   333732
Effective search space used:   333732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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