Query= MSMg01no360_k19.b1 MSMg01no360_k19.b1 CHROMAT_FILE:
MSMg01no360_k19.b1 PHD_FILE: MSMg01no360_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:29 2005
(555 letters)
>mm_chr10_40918567_40919521
Length = 955
Score = 878 bits (454), Expect = 0.0
Identities = 519/560 (92%), Gaps = 33/560 (5%)
Strand = Plus / Plus
Query: 1 gttttaaggaaacccctcactggtgccctttaatgctctttgttcagtggggctgctttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttttaaggaaacccctcactggtgccctttaatgctctttgttcagtggggctgctttt 260
Query: 61 aacacagccatttctgataaaaaagaaaaaaaaaaaaaacctctaccttatactcaaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacacagccatttctgataaaaaagaaaaaaaaaaaaaacctctaccttatactcaaatg 320
Query: 121 cggaactaatgtttgagccctttagactttaatacccaataagatgacttttctggcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cggaactaatgtttgagccctttagactttaatacccaataagatgacttttctggcttg 380
Query: 181 catggattgaataaccagtaaatgttcactggcttggggctgagatgttttcggaattcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catggattgaataaccagtaaatgttcactggcttggggctgagatgttttcggaattcg 440
Query: 241 gtgacatcatgtgtactcatggttagcggttaaactactagacaaaatttggtggttaaa 300
|||||||||||| |||||||||||||||||||||
Sbjct: 441 gtgacatcatgt---------------------------agacaaaatttggtggttaaa 473
Query: 301 ctactagacaacacttacataattttaagaattgcattatgtgattctttttggtatgtt 360
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ctactagataatacttacataattttaagaattgcattatgtgattctttttggtatgtt 533
Query: 361 aaaaccttatccccttgctttggtcagtattttggcatacttcaaacatcatgtagcatt 420
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 534 aaaaccttaaccccttgctttggtcagtattttggcatacttcaaacctcatgtagcatt 593
Query: 421 ttcagaacatctag----agtttgattca-aacgatccatttcccttcccagtgctctgt 475
||||||| |||||| ||||||| ||| || |||||||||||||||||||||||||||
Sbjct: 594 ttcagaatatctagtaagagtttgactcataa-gatccatttcccttcccagtgctctgt 652
Query: 476 ctgttgttactaaaactttcagtatctcccacaaagttgagcctcctccacctcatcatc 535
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ctgttgctactaaaactttcagtatctcccacaaagttgagcctcctccacctcatcatc 712
Query: 536 accatcatcacctcatcaaa 555
|||||||||| |||||||||
Sbjct: 713 accatcatcatctcatcaaa 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_k19.g1 MSMg01no360_k19.g1 CHROMAT_FILE:
MSMg01no360_k19.g1 PHD_FILE: MSMg01no360_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:29 2005
(486 letters)
>mm_chr10_41151382_41152267
Length = 886
Score = 917 bits (474), Expect = 0.0
Identities = 483/486 (99%)
Strand = Plus / Minus
Query: 1 cagagaccagtgtcactgtgaccaagttcctagagctgtgaaggtaaaagaggccttcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cagagaccagtgtcactgtgaccaagttcctagagctgtgaaggtaaaagaggccttcta 485
Query: 61 ataaagcagggccttagagaacacccctccctgtgtgttcttccttggtaggttcataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ataaagcagggccttagagaacacccctccctgtgtgttcttccttggtaggttcataga 425
Query: 121 gagcccatggaatgctagctttgtctccagctctcccttctggttttctttcagatactt 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 424 gagcccatggaaagctagctttgtctccagctctcccttctggttttctttcagatattt 365
Query: 181 ctgaggcattcttgctatgtagcttactcaggtatgtgtcattggagactaactttctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctgaggcattcttgctatgtagcttactcaggtatgtgtcattggagactaactttctag 305
Query: 241 ggaaattgacaaaaataaagtgcttaagaagtgacaaagctgtaaaactgagcttttgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggaaattgacaaaaataaagtgcttaagaagtgacaaagctgtaaaactgagcttttgac 245
Query: 301 atttattttgcagaaataaaataataataacaataacttcagaaggctagtgagatggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 atttattttgcagaaataaaataataataacaataacttcagaaggctagtgagatggtt 185
Query: 361 tagtgggtaaaggtttgatcctagaaactcacataaaattagagggagagaaccaattgt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 cagtgggtaaaggtttgatcctagaaactcacataaaattagagggagagaaccaattgt 125
Query: 421 gcaaaattgttgtctgacctccacacacatgtccccctcttgtgcacacctagtgtgtac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gcaaaattgttgtctgacctccacacacatgtccccctcttgtgcacacctagtgtgtac 65
Query: 481 acatgc 486
||||||
Sbjct: 64 acatgc 59
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
