MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-360N06
Chromosome	10 (Build37)
Map Location	57,333,620 - 57,334,005
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363, Hsf2, Serinc1, LOC211619
Downstream gene	LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100042622 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042622
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 24 ESTs, 3 Proteins

name	LOC668355 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668355
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100042628 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042628
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	EG629739 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:629739 MGI:3647447
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC629742 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:629742
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins pseudo : _no_value

name	LOC668363 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668363
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Hsf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15500 MGI:96239
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Serinc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56442 MGI:1926228
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC211619 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:211619
definition	note : mitochondrial ribosomal protein L48 pseudogene pseudo : _no_value

name	LOC668374 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668374
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 10 ESTs

name	Pkib (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18768 MGI:101937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 5 mRNAs

name	Ppia-ps10_506.1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:544698
definition	note : peptidylprolyl isomerase A pseudogene 10_506.1 pseudo : _no_value

name	Fabp7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12140 MGI:101916
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Smpdl3a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57319 MGI:1931437
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG664783 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:664783 MGI:3704116
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs, 3 Proteins

name	4933403O03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74399 MGI:1921649
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG245263 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245263 MGI:3645498
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gcc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70297 MGI:1917547
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lims1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110829 MGI:1195263
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ranbp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19386 MGI:894323
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	6230424H07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76138 MGI:1923388
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 9 ESTs, 2 Proteins

name	LOC100038981 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038981
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Edar (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13608 MGI:1343498
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC624335 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:624335
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC100039099 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039099
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	LOC100042622 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260765 GeneID:100042622
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 24 ESTs, 3 Proteins product : similar to START domain-containing 6 protein transcript_id : XM_001478516.1

name	LOC100042628 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260767 GeneID:100042628
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100042628 transcript_id : XM_001478524.1

name	EG629739 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388079 GeneID:629739 MGI:3647447
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG629739 transcript_id : XM_901778.2

name	Hsf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560683 GeneID:15500 MGI:96239
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heat shock factor 2 transcript_id : NM_008297.2

name	Serinc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363161 GeneID:56442 MGI:1926228
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine incorporator 1 transcript_id : NM_019760.2

name	LOC668374 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260738 GeneID:668374
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 10 ESTs product : hypothetical LOC668374 transcript_id : XM_001001151.2

name	Pkib (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84794590 GeneID:18768 MGI:101937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase inhibitor beta, cAMP dependent, testis specific transcript_id : NM_008863.3

name	Pkib (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84794588 GeneID:18768 MGI:101937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase inhibitor beta, cAMP dependent, testis specific transcript_id : NM_001039053.1

name	Pkib (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84794584 GeneID:18768 MGI:101937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase inhibitor beta, cAMP dependent, testis specific transcript_id : NM_001039051.1

name	Pkib (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84794586 GeneID:18768 MGI:101937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase inhibitor beta, cAMP dependent, testis specific transcript_id : NM_001039052.1

name	Pkib (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84794582 GeneID:18768 MGI:101937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase inhibitor beta, cAMP dependent, testis specific transcript_id : NM_001039050.1

name	Fabp7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94540560 GeneID:12140 MGI:101916
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fatty acid binding protein 7, brain transcript_id : NM_021272.3

name	Smpdl3a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114431241 GeneID:57319 MGI:1931437
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sphingomyelin phosphodiesterase, acid-like 3A transcript_id : NM_020561.2

name	EG664783 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388199 GeneID:664783 MGI:3704116
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs, 3 Proteins product : predicted gene, EG664783 transcript_id : XM_972624.1

name	4933403O03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260884 GeneID:74399 MGI:1921649
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933403O03 gene transcript_id : XM_618764.4

name	EG245263 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369154 GeneID:245263 MGI:3645498
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG245263 transcript_id : NM_001034869.2

name	Gcc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61742805 GeneID:70297 MGI:1917547
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GRIP and coiled-coil domain containing 2 transcript_id : NM_027375.2

name	Lims1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84794646 GeneID:110829 MGI:1195263
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LIM and senescent cell antigen-like domains 1 transcript_id : NM_026148.2

name	Ranbp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:30842801 GeneID:19386 MGI:894323
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAN binding protein 2 transcript_id : NM_011240.2

name	Edar (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803268 GeneID:13608 MGI:1343498
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ectodysplasin-A receptor transcript_id : NM_010100.2

name	LOC100039099 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260891 GeneID:100039099
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : hypothetical protein LOC100039099 transcript_id : XM_001472224.1

name	LOC100042622 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260766 GeneID:100042622
definition	codon_start : 1 product : similar to START domain-containing 6 protein protein_id : XP_001478566.1

name	LOC100042628 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260768 GeneID:100042628
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478574.1

name	EG629739 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82932654 GeneID:629739 MGI:3647447
definition	codon_start : 1 product : hypothetical protein protein_id : XP_906871.1

name	Hsf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560684 CCDS:CCDS23852.1 GeneID:15500 MGI:96239
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006986 - response to unfolded protein [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : heat shock factor 2 protein_id : NP_032323.2

name	Serinc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790269 CCDS:CCDS23853.1 GeneID:56442 MGI:1926228
definition	GO_component : GO:0005789 - endoplasmic reticulum membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence ISS] [Evidence IDA] GO_function : GO:0015194 - L-serine transporter activity [Evidence ISS]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0015825 - L-serine transport [Evidence ISS]; GO:0006658 - phosphatidylserine metabolism [Evidence ISS]; GO:0051347 - positive regulation of transferase activity [Evidence ISS]; GO:0006665 - sphingolipid metabolism [Evidence ISS] codon_start : 1 note : membrane protein TMS-2; tumor differentially expressed 1, like product : tumor differentially expressed 2 protein_id : NP_062734.1

name	LOC668374 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94388081 GeneID:668374
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001001151.1

name	Pkib (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794591 CCDS:CCDS23854.1 GeneID:18768 MGI:101937
definition	GO_function : GO:0004862 - cAMP-dependent protein kinase inhibitor activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004860 - protein kinase inhibitor activity [Evidence IEA] GO_process : GO:0006469 - negative regulation of protein kinase activity [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; protein kinase, cAMP-dependent, catalytic, inhibitor 2 product : cAMP-dependent protein kinase inhibitor beta isoform 1 protein_id : NP_032889.3

name	Pkib (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794589 GeneID:18768 MGI:101937
definition	GO_function : GO:0004862 - cAMP-dependent protein kinase inhibitor activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004860 - protein kinase inhibitor activity [Evidence IEA] GO_process : GO:0006469 - negative regulation of protein kinase activity [Evidence IEA] codon_start : 1 note : isoform 3 is encoded by transcript variant 5; protein kinase, cAMP-dependent, catalytic, inhibitor 2 product : cAMP-dependent protein kinase inhibitor beta isoform 3 protein_id : NP_001034142.1

name	Pkib (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794583 CCDS:CCDS23855.1 GeneID:18768 MGI:101937
definition	GO_function : GO:0004862 - cAMP-dependent protein kinase inhibitor activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004860 - protein kinase inhibitor activity [Evidence IEA] GO_process : GO:0006469 - negative regulation of protein kinase activity [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; protein kinase, cAMP-dependent, catalytic, inhibitor 2 product : cAMP-dependent protein kinase inhibitor beta isoform 2 protein_id : NP_001034139.1

name	Pkib (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794585 CCDS:CCDS23855.1 GeneID:18768 MGI:101937
definition	GO_function : GO:0004862 - cAMP-dependent protein kinase inhibitor activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004860 - protein kinase inhibitor activity [Evidence IEA] GO_process : GO:0006469 - negative regulation of protein kinase activity [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 3; protein kinase, cAMP-dependent, catalytic, inhibitor 2 product : cAMP-dependent protein kinase inhibitor beta isoform 2 protein_id : NP_001034140.1

name	Pkib (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794587 CCDS:CCDS23855.1 GeneID:18768 MGI:101937
definition	GO_function : GO:0004862 - cAMP-dependent protein kinase inhibitor activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004860 - protein kinase inhibitor activity [Evidence IEA] GO_process : GO:0006469 - negative regulation of protein kinase activity [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 4; protein kinase, cAMP-dependent, catalytic, inhibitor 2 product : cAMP-dependent protein kinase inhibitor beta isoform 2 protein_id : NP_001034141.1

name	Fabp7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946572 CCDS:CCDS23856.1 GeneID:12140 MGI:101916
definition	GO_component : GO:0042995 - cell projection [Evidence IDA]; GO:0043025 - cell soma [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : mammary-derived growth inhibitor-related; brain lipid binding protein product : fatty acid binding protein 7, brain protein_id : NP_067247.1

name	Smpdl3a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114431242 CCDS:CCDS23857.1 GeneID:57319 MGI:1931437
definition	EC_number : 3.1.4.- GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : ASM-like phosphodiesterase 3a product : acid sphingomyelinase-like phosphodiesterase 3a protein_id : NP_065586.3

name	EG664783 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94388200 GeneID:664783 MGI:3704116
definition	codon_start : 1 product : similar to homeobox protein protein_id : XP_977718.1

name	4933403O03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260885 GeneID:74399 MGI:1921649
definition	codon_start : 1 product : hypothetical protein LOC74399 protein_id : XP_618764.4

name	EG245263 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702209 GeneID:245263 MGI:3645498
definition	codon_start : 1 product : hypothetical protein LOC245263 protein_id : NP_001030041.1

name	Gcc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61742806 CCDS:CCDS23859.1 GeneID:70297 MGI:1917547
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] codon_start : 1 product : GRIP and coiled-coil domain-containing 2 protein_id : NP_081651.2

name	Lims1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794647 CCDS:CCDS23860.1 GeneID:110829 MGI:1195263
definition	GO_component : GO:0005925 - focal adhesion [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0016337 - cell-cell adhesion [Evidence IMP]; GO:0007160 - cell-matrix adhesion [Evidence IMP]; GO:0043009 - embryonic development (sensu Vertebrata) [Evidence IMP]; GO:0007163 - establishment and/or maintenance of cell polarity [Evidence IMP] codon_start : 1 note : LIM and senescent cell antigen-like domains 1-like product : LIM and senescent cell antigen-like domains 1 protein_id : NP_080424.2

name	Ranbp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19882199 CCDS:CCDS23861.1 GeneID:19386 MGI:894323
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0016853 - isomerase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0046907 - intracellular transport [Evidence IEA]; GO:0006457 - protein folding [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : RAN binding protein 2 protein_id : NP_035370.1

name	Edar (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753714 CCDS:CCDS23862.1 GeneID:13608 MGI:1343498
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0042346 - positive regulation of NF-kappaB import into nucleus [Evidence IDA]; GO:0007431 - salivary gland development [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : ectodysplasin-A receptor protein_id : NP_034230.1

name	LOC100039099 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260892 GeneID:100039099
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472274.1

name	LOC668355 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668355
definition	number : 5 pseudo : _no_value

name	LOC668355 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668355
definition	number : 4 pseudo : _no_value

name	LOC668355 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668355
definition	number : 3 pseudo : _no_value

name	LOC668355 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668355
definition	number : 2 pseudo : _no_value

name	LOC668355 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668355
definition	number : 1 pseudo : _no_value

name	LOC668363 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668363
definition	number : 1 pseudo : _no_value

name	LOC668363 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668363
definition	number : 2 pseudo : _no_value

name	LOC668363 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668363
definition	number : 3 pseudo : _no_value

name	LOC100038981 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100038981
definition	number : 1 pseudo : _no_value

name	LOC100038981 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100038981
definition	number : 2 pseudo : _no_value

name	LOC100038981 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100038981
definition	number : 3 pseudo : _no_value

name	LOC624335 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624335
definition	number : 1 pseudo : _no_value

name	LOC624335 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624335
definition	number : 2 pseudo : _no_value

name	(CDS detail)
type	repeat_region
link
xref
definition	rpt_family : (TG)n

name	(CDS detail)
type	repeat_region
link
xref
definition	rpt_family : B1F

name	(CDS detail)
type	repeat_region
link
xref
definition	rpt_family : (CAAAA)n

name	LOC629742 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260737 GeneID:629742
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins product : similar to CDK5 regulatory subunit associated protein 3 pseudo : _no_value transcript_id : XR_033168.1

name	6230424H07Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149260889 GeneID:76138 MGI:1923388
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 9 ESTs, 2 Proteins product : RIKEN cDNA 6230424H07 gene transcript_id : XR_001535.2

clone name	MSMg01-469J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-208F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-207E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495G03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-079G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-129N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-207K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440L05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-471A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415G18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-501D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162A19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140F24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133P19
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-360N06.T7 (MSMg01no360_n06.b1)	MSMg01-360N06.TJ (MSMg01no360_n06.g1)
ACC	AG469908	AG469909
length	758	745
length of high quality (start - end)	402 (71 - 472)	464 (79 - 542)
definition	CHROMAT_FILE: MSMg01no360_n06.b1 PHD_FILE: MSMg01no360_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:40 2005	CHROMAT_FILE: MSMg01no360_n06.g1 PHD_FILE: MSMg01no360_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:40 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC GGAATTCTCAGTCTTATCAAAGATAGCTGGAAGAGATTATGCAGTCATAG ACTCTAAGGCTTCAGCCTTGGTCAGAGATGCCTCTGTTTGCCGTGGGTTA GGATTGTCTTTACTTGTGTTCTAATTGTTAGATGTAGTCTTGGTACTGCC AAATGATTTCTCATTTAAGTCACTGTTATTTCAACTATATGGTTCTAGCT ATATTTTAAAATTAGTTAGGTCGTTTGATGATTTCACACACACACACACA CACACACACACACATACACACACTCTTTATTTTGGATATGTTGACTATCT ATGACTCTCTCTCTCATCATCTTCTTTCCCATCACACTGGACCTTTTCTT CAACAAGTCTCCCTCTTCATGTCTTTTTGTTGTTGTTCTTGGGTTGGTTT TTTTTTTTCCTTATATTTTGGGGACTTTGCTGGTTAGGTTTTGCAAACTT AACATGAACTAGAGTCACTTGGCATGTAAAAGTTAATTTGAAACATTGAC TCTTTTATATTTGCTAGTGGGGTATTTTCCTAATGAAATATTTAACTTAG GTTGTTCTAANGGCTCTTTGCTTACCTCCCTCAATTTTTCCCTGTTTTTG TTCTAATAATCTCCCTTGTGTTCCCTTTCTTTTCTTTTATTACCATTTTC TATACTTCTTTTTTCTGTTACTCCTTCTTTATTTTTGTTGGTTTTCTCTT TTTTCTTC	NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG CAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG GAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGG AAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGA TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTA AGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC AGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAA AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTATAAAGAATG AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTG AGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGAT AAGTGGATATTAACCCCAAACCTAGTAACCCCAGATATAATATATAATTT TGCTAAAACCTTGGAGCTCCCGACCAANGAAAACGGAAATGTGGG
quality values	Open. Hide. 0 3 7 7 8 8 15 12 11 11 15 29 34 37 37 32 27 29 37 23 23 20 20 20 24 37 37 22 19 19 19 18 19 21 9 7 7 7 7 7 13 18 17 17 23 29 30 31 47 43 48 35 35 35 31 33 33 37 37 25 19 8 8 8 6 8 9 10 9 11 17 26 33 33 28 33 59 59 59 57 57 57 59 43 43 43 50 40 47 53 53 50 50 50 53 68 68 68 68 68 68 68 68 68 68 57 59 59 59 57 50 51 50 50 50 50 44 44 47 35 35 32 44 44 68 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 57 48 48 42 42 42 48 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 59 59 59 59 59 57 57 57 57 57 57 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 57 57 57 57 57 57 59 59 68 68 57 57 57 57 54 57 59 59 59 68 68 59 59 68 68 68 57 57 57 57 57 59 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 43 46 43 46 46 48 39 39 35 35 35 40 37 43 39 39 39 39 39 43 43 53 48 48 47 59 59 59 22 17 8 8 8 8 8 8 12 22 36 41 59 41 48 48 48 48 48 48 48 48 48 48 57 57 57 59 59 59 48 47 48 48 59 59 68 68 68 68 68 68 57 57 48 48 48 57 59 68 68 59 59 59 59 59 59 57 57 57 57 57 57 57 48 44 44 44 43 43 44 44 57 59 59 59 59 59 57 46 46 43 43 43 47 57 59 59 59 59 57 68 68 68 68 48 57 48 43 43 43 43 59 59 57 59 59 59 57 36 33 28 22 22 25 34 40 41 59 59 59 41 41 37 30 34 25 25 25 41 41 59 50 48 48 48 48 43 43 40 39 39 30 30 31 39 37 34 30 18 17 27 27 13 16 16 16 16 11 10 10 10 12 20 17 15 12 10 10 19 19 13 12 10 10 12 18 28 26 26 17 17 14 24 18 12 9 10 10 15 10 14 14 22 18 10 9 9 10 11 11 9 11 8 8 8 8 8 8 8 12 14 16 19 15 10 10 10 8 8 8 8 10 10 8 15 18 15 10 11 15 12 9 10 15 15 10 11 11 19 19 15 8 8 8 8 9 9 9 10 13 8 9 9 14 9 8 12 9 9 9 9 9 11 11 12 8 8 8 10 12 15 10 12 9 8 8 8 10 8 8 8 8 7 7 8 8 8 8 3 0 3 11 12 12 18 18 19 11 11 8 10 8 8 8 12 11 8 8 8 10 10 10 12 12 15 21 12 12 8 8 6 7 6 6 8 6 6 7 7 10 8 8 6 7 8 10 10 8 7 7 7 11 12 15 10 8 8 8 8 12 13 13 11 11 12 12 16 19 12 8 8 6 6 8 8 8 8 10 9 10 8 9 9 9 13 12 10 9 8 8 8 8 8 8 8 8 8 8 8 8 10 11 9 12 9 8 8 8 8 8 8 12 13 10 10 10 10 12 10 10 10 10 8 8 7 7 7 8 9 9 8 9 7 8 8 10 11 15 21 21 30 17 11 6 6 8 6	Open. Hide. 0 3 6 6 6 11 10 10 10 9 15 9 9 9 23 22 31 31 36 39 39 39 39 39 39 39 39 39 44 44 37 26 15 8 8 7 8 8 8 8 16 10 12 12 32 25 48 48 48 48 47 47 50 47 47 53 53 53 53 53 44 27 23 9 8 10 12 24 19 32 32 41 29 42 41 41 47 50 53 68 68 68 50 50 50 50 50 48 50 50 50 68 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 51 50 50 50 50 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 68 48 48 48 50 50 50 68 50 50 51 50 50 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 52 52 43 43 43 52 52 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 54 59 54 54 57 59 59 68 68 68 68 68 68 68 68 57 57 57 57 68 68 57 59 57 57 57 57 57 48 59 59 68 59 59 59 47 54 57 57 57 57 59 57 57 59 57 57 68 68 68 68 54 54 57 59 68 59 59 48 48 48 48 48 54 54 54 53 57 57 50 57 57 57 57 57 48 57 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 37 32 31 29 26 30 23 23 28 34 37 32 34 39 43 43 41 31 32 35 37 37 41 41 39 35 35 38 34 34 39 34 39 39 39 39 39 41 41 32 34 25 22 18 22 19 20 32 32 41 41 30 36 25 25 23 24 19 32 25 27 32 34 33 28 34 34 40 37 41 39 36 33 37 31 36 12 12 9 9 9 16 17 23 18 16 18 22 19 25 31 36 35 37 37 24 20 20 22 22 22 30 24 26 16 15 15 11 9 9 9 9 11 14 28 22 18 22 14 10 10 14 11 12 22 19 19 20 20 23 22 13 14 12 13 16 18 17 11 11 11 12 18 17 9 9 9 10 10 10 10 13 11 14 9 9 9 15 15 23 22 16 19 14 16 16 9 9 9 11 11 14 14 18 23 21 15 13 13 11 14 9 9 9 13 13 9 8 7 6 6 6 6 8 8 10 10 13 12 13 14 15 23 18 10 12 10 9 9 11 11 11 9 9 11 10 10 11 14 9 9 9 9 11 11 12 10 10 10 10 8 8 10 9 9 9 13 10 9 9 12 13 8 8 6 7 7 8 10 10 10 10 9 9 9 10 10 11 11 11 9 9 9 9 3 0 3 11 11 9 8 8 8 8 8 8 6 8 6 6 6 15 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no360_n06.b1 MSMg01no360_n06.b1 CHROMAT_FILE:
MSMg01no360_n06.b1 PHD_FILE: MSMg01no360_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:40 2005
         (402 letters)



>mm_chr10_57333420_57334221
          Length = 802

 Score =  658 bits (340), Expect = 0.0
 Identities = 379/404 (93%), Gaps = 20/404 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatagctggaagagattatgcagtcatagactctaaggcttcagccttggtcagagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatagctggaagagattatgcagtcatagactctaaggcttcagccttggtcagagatg 260

                                                                       
Query: 61  cctctgtttgccgtgggttaggattgtctttacttgtgttctaattgttagatgtagtct 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctgtttgcagtgggttaggattgtctttacttgtgttctaattgttagatgtagtct 320

                                                                       
Query: 121 tggtactgccaaatgatttctcatttaagtcactgttatttcaactatatggttctagct 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtagtgccaaatgatttctcatttaagtcactgttatttcaactatatggttctagct 380

                                                                       
Query: 181 atattttaaaattagttaggtcgtttgatgatttcacacacacacacacacacacacaca 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 atattttaaaattagttaggtcgtttgatgatttcacacacacacatacacacacacaca 440

                                                                       
Query: 241 cacatacacacactctttattttggatatgttgactatctatgactctctctctcatcat 300
                             ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ------------------attttggatatgttgactatctatgactctctctctcatcat 482

                                                                       
Query: 301 cttctttcccatcacactggaccttttcttcaacaagtctccctcttcatgtctttttgt 360
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cttcttttctatcacactggaccttttcttcaacaagtctccctcttcatgtctttttgt 542

                                                       
Query: 361 tgttgttcttgggttggttttttttttt--ccttatattttggg 402
           ||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 543 tgttgttcttgggttggttttttttttttcccttatattttggg 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information