BAC Information

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BAC

Clone NameMSMg01-360O23
Chromosome10 (Build37)
Map Location 37,063,430 - 37,063,934
singlet/doubletsinglet
Overlap genenone
Upstream geneHs3st5, Hdac2, Marcks, LOC100040846
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360O23.T7 (MSMg01no360_o23.b1)MSMg01-360O23.TJ (MSMg01no360_o23.g1)
ACCAG469989AG469990
length753775
length of high quality
(start - end)
516 (68 - 583)506 (72 - 577)
definitionCHROMAT_FILE: MSMg01no360_o23.b1 PHD_FILE: MSMg01no360_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:49 2005CHROMAT_FILE: MSMg01no360_o23.g1 PHD_FILE: MSMg01no360_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCTGAGTACCACCAAATGGCTGAGAAGCACCTGAAAAAATGTTCA
ACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCCA
TCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGATAGCAGAT
GCTGGCTAGGATGTGGAGAAAGAGGAACACTCCCCCATTGTTGGTGGGAT
TGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTTAGAAA
ATTGGACATAGTACTACCGGAGTATCCCGCAATACCTCTCCTTGGCATAT
ATCCAGAAGATGCCCCAACCAGTAAGAAGGACACATGCTCCACTATGTTC
ATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCC
CTCAACAGAGGAATGGGTACAAAAAACGTGGTACATTTACACAATGGAGT
ACTACTCAGCTATTAAAAGGAATGAATTTATGAAATTCCTAGGCAAATGG
TTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCAATCACAAAAGAAC
TCAAATGATATGTATTCACTGATAAGTGGATATTATTCCAGACACTTAGC
ATACCCGAGATATAAGATACTATTTGCAAAACACATGAAACTGATGAAGA
ATGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAAAATTGGAAACAAA
CAC
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTGTTCAAAAGGAGCTTATAGGTTAATG
ATAATGTTTTCCTCAGCTTTACCTATTTCACCAGAGTACTAAGGGGATGT
AGTACTCATATGCATTGTTGGGGAAGAAGGGGGATGTGAGTATCAAAATG
TACTACATAGTTCAAGGACAGATACTAATTCTGAAATTATTTAGATTACT
TCCCTACCTTATCAGTTTGGGGTCATAGAGAAGATGTTTGTGGTATTTAC
CAGTGCCCTAGATTTCCTGTGGAATGAGAGGATGTTTTACTGTGCCATCA
TCTTGAAATTAGGTTTATGGCATGTGTGACTTTTTTTAGTCAGTGAAATA
TGAGTGTCATTCCAAACATATATATTTAATTGCTGGTGTGATAATATTCC
AGCATCCTTCTCACCTGTCTCAGCTGCCATGGAAACACATGTTGATGTGG
AGATACCACATGAAGCCATCCCAGGAAAGGATGCTACCTTTAAGAATCAT
AGTTATTCCCCAGACTACAGATGACCCAGAATAGAACAGGGCTTGCCAAG
TAAGGAGGAGGAAGCACGTTTGGATTCCAGGCACTCTCTTAAAAGTCAAG
CCTGGTTTAGGTGCACTTGTACCCCCCAGCAATGGGATGGAAAGTCAAAT
TTTAGTCCCCCCTGCTTGTGTAGAATTCCGTTGGGGGGCTTTCTTTTGTT
TCCTTATGAATGGTTTTCCTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_o23.g1 MSMg01no360_o23.g1 CHROMAT_FILE:
MSMg01no360_o23.g1 PHD_FILE: MSMg01no360_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:49 2005
         (506 letters)



>mm_chr10_37063230_37064135
          Length = 906

 Score =  969 bits (501), Expect = 0.0
 Identities = 504/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgttcaaaaggagcttataggttaatgataatgttttcctcagctttacctatttcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 agtgttcaaaaggagcttataggttaatgataatgttttcctcagctttacctatttcac 646

                                                                       
Query: 61  cagagtactaaggggatgtagtactcatatgcattgttggggaagaagggggatgtgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 cagagtactaaggggatgtagtactcatatgcattgttggggaagaagggggatgtgagt 586

                                                                       
Query: 121 atcaaaatgtactacatagttcaaggacagatactaattctgaaattatttagattactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 atcaaaatgtactacatagttcaaggacagatactaattctgaaattatttagattactt 526

                                                                       
Query: 181 ccctaccttatcagtttggggtcatagagaagatgtttgtggtatttaccagtgccctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ccctaccttatcagtttggggtcatagagaagatgtttgtggtatttaccagtgccctag 466

                                                                       
Query: 241 atttcctgtggaatgagaggatgttttactgtgccatcatcttgaaattaggtttatggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 atttcctgtggaatgagaggatgttttactgtgccatcatcttgaaattaggtttatggc 406

                                                                       
Query: 301 atgtgtgactttttttagtcagtgaaatatgagtgtcattccaaacatatatatttaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atgtgtgactttttttagtcagtgaaatatgagtgtcattccaaacatatatatttaatt 346

                                                                       
Query: 361 gctggtgtgataatattccagcatccttctcacctgtctcagctgccatggaaacacatg 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gctggtgtgatactattccagcatccttctcacctgtctcagctgccatggaaacacatg 286

                                                                       
Query: 421 ttgatgtggagataccacatgaagccatcccaggaaaggatgctacctttaagaatcata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ttgatgtggagataccacatgaagccatcccaggaaaggatgctacctttaagaatcata 226

                                    
Query: 481 gttattccccagactacagatgacc 505
           |||||||||||||||||||||||||
Sbjct: 225 gttattccccagactacagatgacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)