BAC Information

Click to search

BAC

Clone NameMSMg01-361I15
Chromosome10 (Build37)
Map Location 104,450,010 - 104,450,646
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292, LOC100042383
Downstream geneTmtc2, EG627573, BC067068, Ccdc59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361I15.T7 (MSMg01no361_i15.b1)MSMg01-361I15.TJ (MSMg01no361_i15.g1)
ACCAG470443AG470444
length757766
length of high quality
(start - end)		642 (47 - 688)439 (76 - 514)
definitionCHROMAT_FILE: MSMg01no361_i15.b1 PHD_FILE: MSMg01no361_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:37 2005CHROMAT_FILE: MSMg01no361_i15.g1 PHD_FILE: MSMg01no361_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTACTAATTATAAGCTATATTTAAATATTTTTGAAGCTTTCATGA
TAGAAAAATGTTGTGGATACCTTTGTATACCTTTAGCATAAACCCAATAA
AATTGCATTGGTAGATCTTATTACTTGCTAGAAACAGAGTTTTCTAAAGA
AATATGGGTTGTTGTCCATTCCCTACCTTTTAATTATAATAAATGGAATT
AAATAAATGTAGTCTAAGTCATTTCTATGTTTTCTATAGCCAAGGAAAAT
GTTCCAACAGTCCCATGGGAATGCTCAGGATTCATATCCAAAGCTATTAA
AACAATGACACAGCTCAGATTTGTTTCCAGACATCTCCTCAAGCTCCTTT
CATTAGTGTTCAAGACTGCAGATGCCACTGCAGGAATCCTGGTGGCCGTG
ACTTCCCATTGACTCCAGTAGGGACATTTTCTGAGAAAATGCTTTCCCTA
GCAGTTCTGATCTAATAAAGTAAAATAGGGCTCTTTGGTCTAAAAGAAGC
TTTATATCTTTTATCTGAGGCTTTTATCCCCCATCCTGAGTGAATAATGG
ATTAAAAGATAGAGTTGCCAGCTTCCTCCCTCACGGCGTCCATAATCTCC
CCAGCAGAAAAATACACACTTAGGGAAAAAGCTAGGGAGTCTTAAGTTTG
AATTACTTTTAGAAGGCTAATAGAATTTATATTCCCAGATTCCCCAAATG
TTGGAAN

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCAT
GAATAGGTGTTGGATTTTTTCAAATGGTTTCTCAGCATCTAAGGACATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATATTGGATTACGTTGATG
GATTTCCGTATATTGAACCATCCCTGCATCCCTGGGATGAAACCTACTTG
GTCAGGATGGATGATTGTTTTGATGTGTTCTTGGATTTGGTTAGCAAGAA
CTTTATTGAGGATTTTTGCATCAATATTCATAAGGGAAATTGGTCTGAGG
TTCTCTATCTTTGTTGGGAAAAGACAACATTTTCAACAAATGGTGCTGGC
ACAACTGGCTGTTATCATGTAGAAGACTTCGAATTGATCCATTTCTGTCT
CCTTGTACTAAGGCTAAATCTAAGTGGATTAAGGAACTCCACATAAAACC
AGAGACACTGAAACTTATACAGGAGAAAGTAGGGAAAAGCCTCGAACATA
TGGGTAAAGGTGAAAAATTCCTGTATAGATCAGCAATGACTTGTGCTGTA
AGATCGAGAATCTACCCTCTTTCTTTGGCCTCCTATACTTGGTTCTAGCC
AACACCATCCCAACGTCTCAAGCTCCCTTCCTTATTAATACTTATTGCCT
CCATGTTCTTTTTTGTTACTTATATGTCTTAACTTTTTTGTCCTCGTAGG
GTCCCTCTTTGACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_i15.b1 MSMg01no361_i15.b1 CHROMAT_FILE:
MSMg01no361_i15.b1 PHD_FILE: MSMg01no361_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:37 2005
         (642 letters)



>mm_chr10_104449806_104450846
          Length = 1041

 Score = 1149 bits (594), Expect = 0.0
 Identities = 627/640 (97%), Gaps = 5/640 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctactaattataagctatatttaaatatttttgaagctttcatgatagaaaaatg 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gaattctactaaaaataagctatatttaaatatttttgaagctttcatgatagaaaaatg 782

                                                                       
Query: 65  ttgtggatacctttgtatacctttagcataaacccaataaaattgcattggtagatctta 124
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 781 ttgtggattcctttgtatacctttagcataaacccaataaaattgcattggtagatatta 722

                                                                       
Query: 125 ttacttgctagaaacagagttttctaaagaaatatgggttgttgtccattccctaccttt 184
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 721 ttacttgctagaaacagagttttctaaagaaatatgggttgttgtccatttcctaccttt 662

                                                                       
Query: 185 taattataataaatggaattaaataaatgtagtctaagtcatttctatgttttctatagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 661 taattataataaatggaattaaataaatgtagtctaagtcatttctacgttttctatagc 602

                                                                       
Query: 245 caaggaaaatgttccaacagtcccatg--ggaatgctcaggattcatatccaaagctatt 302
           |||||||||||||||||||||||   |  |||||||||||||||||||||||||||||||
Sbjct: 601 caaggaaaatgttccaacagtcc---ggtggaatgctcaggattcatatccaaagctatt 545

                                                                       
Query: 303 aaaacaatgacacagctcagatttgtttccagacatctcctcaagctcctttcattagtg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aaaacaatgacacagctcagatttgtttccagacatctcctcaagctcctttcattagtg 485

                                                                       
Query: 363 ttcaagactgcagatgccactgcaggaatcctggtggccgtgacttcccattgactccag 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ttcaagactgcagatgccactgcaggaatcctggtggccgtgacttcccattgactccag 425

                                                                       
Query: 423 tagggacattttctgagaaaatgctttccctagcagttctgatctaataaagtaaaatag 482
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 424 tagggacattttctgagaaaatgctttccctagcagtactgatctaataaagtaaaatag 365

                                                                       
Query: 483 ggctctttggtctaaaagaagctttatatcttttatctgaggcttttatcccccatcctg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ggctctttggtctaaaagaagctttatatcttttatctgaggcttttatcccccatcctg 305

                                                                       
Query: 543 agtgaataatggattaaaagatagagttgccagcttcctccctcacggcgtccataatct 602
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 304 agtgaataatggattaaaagatagagttgccagcttcctccctcacagcgtccataatct 245

                                                   
Query: 603 ccccagcagaaaaatacacacttagggaaaaagctaggga 642
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ccccagcagaaaaatacacacttagggaaaaagctaggga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1041
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1031
Effective search space:   651592
Effective search space used:   651592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |