BAC Information

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BAC

Clone NameMSMg01-361L16
Chromosome10 (Build37)
Map Location 117,297,457 - 117,501,353
singlet/doubletdoublet
Overlap genenone
Upstream geneGm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b
Downstream geneMdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng, LOC100043478, LOC100042850, Dyrk2, LOC668223
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361L16.T7 (MSMg01no361_l16.b1)MSMg01-361L16.TJ (MSMg01no361_l16.g1)
ACCAG470585AG470586
length760780
length of high quality
(start - end)		520 (47 - 566)237 (78 - 314)
definitionCHROMAT_FILE: MSMg01no361_l16.b1 PHD_FILE: MSMg01no361_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:51 2005CHROMAT_FILE: MSMg01no361_l16.g1 PHD_FILE: MSMg01no361_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,297,457 - 117,297,973)(117,501,243 - 117,501,353)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGTTGTCACTGTTGGGATCTAGCAGTGACTCTTTGCTAAGGGG
AACTGAATCACAGAAACACAAGGCCCCCATTGCCCAGAAAAAAATCTTTC
CTCTCTCTTGGCTAACCTGAAATGGCACTGTTGAAACCGGTCCGGGTTAG
GAAGACAAAAGTGCCCTTGTCATCAGAAAACCCTGGTTACTTGAGCGGAA
GAGGAGGGACTGGATTCCGTCCAGCTCTCTCCTTAGCACAGGTTAGTGTG
TCAGATAAGGTAAATTGTCCCAGGGACAGCCTTGAGCAAGTGCCACCAGT
CCTCGTGGGTAAGGTTTAGTGAGGTCTGAAGGGTCCTGAAGTCGTGCCGG
GGCAAGGCCGTGCTTGGACACCAAGTGAGCCTCAGCCACACTTCCTGTAG
TAAGGATGGTTTGTTGCGAGTCATAGATTGGTCAGAGGTCTCTTAAGCAG
ACCGGGAGTGTGATAGGATACAGAGACATCCCAGGGAACTATGGAATTAT
TGAACAACTAGGCCCCAGGAAGGAAAGTCCTGTGACTGTGGTCGTAAGTC
ATGGAGGTCCCAGCCTGTGGTCATGCTGTGGCCTGACTTGCCGTTTTCTT
ACCCTTGTGACTGTGATAAAATGACTTGTTTTATTGTATTCGGGCTGTTA
TCTTCTTTTCCCTTGCTTTAAGCTGCGCATCCACATACTTTCTCTCTCTT
TTTACTTTCT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGTCTACCTGTTAGGAACTCA
TCAGACCATTACTGTCAGCTCACTGCCACGGCTGCATCTTTTAAGAGAAA
TAGTGTCTGTTTGTAGAATAGTTGCCCAACCTCACTCAGAGGTAGATAGA
TAGTTAGATGACTGATAGATGATTGGTAGATAGATAGATAATCAATTGAT
AGATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA
TAGATAGATAGATANATANATNTTTTTATNTATTTTTTTTTATTATTTTT
TTTTTATTTTTTTATTTTTTTTTTTAATTTATTTTTTTTTTTTTTNTTTT
TTTTTTTATTAAAAACTTTTATTTATTTTTTTANAATTTTTTATTTTTTT
TTATTTTTATTTTATTATATATTATTTATATATTTATTTTTATTTATTTT
ATATTTTTTTACAAACTTTTTATTTTAAAATATTTTTTTTTTTTTTATTT
ATTTTTTTTTTTTTTTTCCCCCTCTCCCTTTTCCTTTTTCATTCTCTTCC
TCTTTTTTTTCCACTTTCTTCTTTTTTCTTTCATTCCTTCTTTTTTCTCC
CTCCTCCCCCCCTTTTCTCCTCTATTTCTTCTTTCCCNCCTCTTCTTTCT
TCCTTCCCTTCTCTCTTCTTCTACCCTCCACATCTCCCCCTATTTTTCTA
CCTTTTCTCTTTCCCCTTCTCTTTACCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_l16.b1 MSMg01no361_l16.b1 CHROMAT_FILE:
MSMg01no361_l16.b1 PHD_FILE: MSMg01no361_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:51 2005
         (520 letters)



>mm_chr10_117297254_117298173
          Length = 920

 Score =  969 bits (501), Expect = 0.0
 Identities = 513/517 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctgttgtcactgttgggatctagcagtgactctttgctaaggggaactgaatc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctgttgtcactgttgggatctagcagtgactctttgctaaggggaactgaatc 263

                                                                       
Query: 64  acagaaacacaaggcccccattgcccagaaaaaaatctttcctctctcttggctaacctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acagaaacacaaggcccccattgcccagaaaaaaatctttcctctctcttggctaacctg 323

                                                                       
Query: 124 aaatggcactgttgaaaccggtccgggttaggaagacaaaagtgcccttgtcatcagaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaatggcactgttgaaaccggtccgggttaggaagacaaaagtgcccttgtcatcagaaa 383

                                                                       
Query: 184 accctggttacttgagcggaagaggagggactggattccgtccagctctctccttagcac 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 accctggttacttgagcggaagaggagggactggattccgtccagctctctcattagcac 443

                                                                       
Query: 244 aggttagtgtgtcagataaggtaaattgtcccagggacagccttgagcaagtgccaccag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggttagtgtgtcagataaggtaaattgtcccagggacagccttgagcaagtgccaccag 503

                                                                       
Query: 304 tcctcgtgggtaaggtttagtgaggtctgaagggtcctgaagtcgtgccggggcaaggcc 363
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 504 tcctcgtgggtaaggtttagtgaggcctgaagggtcctgaagtcgtgccggggcaaggcc 563

                                                                       
Query: 364 gtgcttggacaccaagtgagcctcagccacacttcctgtagtaaggatggtttgttgcga 423
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atgcttggacaccaagtgagcctcagccacacttcctgtagtaaggatggtttgttgcga 623

                                                                       
Query: 424 gtcatagattggtcagaggtctcttaagcagaccgggagtgtgataggatacagagacat 483
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 624 gtcatagattggtcagaggtctcttaagcagactgggagtgtgataggatacagagacat 683

                                                
Query: 484 cccagggaactatggaattattgaacaactaggcccc 520
           |||||||||||||||||||||||||||||||||||||
Sbjct: 684 cccagggaactatggaattattgaacaactaggcccc 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no361_l16.g1 MSMg01no361_l16.g1 CHROMAT_FILE:
MSMg01no361_l16.g1 PHD_FILE: MSMg01no361_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:51 2005
         (237 letters)



>mm_chr10_117501043_117501679
          Length = 637

 Score =  192 bits (99), Expect = 2e-53
 Identities = 108/111 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggtctacctgttaggaactcatcagaccattactgtcagctcactgccacggctgcat 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 311 tgggtccacctgttaggaactcatcagaccattactgtcagctcactgccaaggctgcat 252

                                                              
Query: 61  cttttaagagaaatagtgtctgtttgtagaatagttgcccaacctcactca 111
           ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 251 cttttaagagaaatagtgtctgtttgtggaatagttgcccaacctcactca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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