BAC Information

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BAC

Clone NameMSMg01-363H22
Chromosome10 (Build37)
Map Location 13,441,413 - 13,441,914
singlet/doubletsinglet
Overlap geneAig1
Upstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1
Downstream geneEG666859, Hivep2, Gpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363H22.T7 (MSMg01no363_h22.b1)MSMg01-363H22.TJ (MSMg01no363_h22.g1)
ACCAG471921AG471922
length778760
length of high quality
(start - end)
507 (10 - 516)238 (84 - 321)
definitionCHROMAT_FILE: MSMg01no363_h22.b1 PHD_FILE: MSMg01no363_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:13 2005CHROMAT_FILE: MSMg01no363_h22.g1 PHD_FILE: MSMg01no363_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTATACGACTCCTATAGTCAGAGGATCCGCGGAATTCTGCCTGAG
AAAGCACAGTTCTATTGATGTGTCTCAACATGCTGGTAGAGTTGCTTTCA
AGGGATGAAAGCCTGACTGGACTCAAGCTTTTATGAACCCCTCTAGCTAC
ACTCACTAGAGACCTGCCTCCCCCTTCCCTTCTTCGTTTACTTACAAAAT
CCCAATTATAAAAAGCAGAACCACCACACAGCACTTAATGTTGCAGTGAT
GAATATTTACGTATGAAGTGATGAATATTTAGGACCTCAGTTGCTCATTA
AAGCGCACACTTTAAAAATAATCTCCATCTGTAGACACTCCTAGGTGCAG
GTGAGAATGAGAACACACAGAGGGGTTATCAAGGTTTATTCCAGTTGACA
GGGCTTAAAAGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCTAAAG
AGGAATGAAATAGTTCCGTGTCCTCATGACACTATTGTACCCAGAACCTT
AACAATGACTCCAGATACAAAGGTCCGTGTGTTTTAAGTTACAGCAGCAT
ATTAAAAACTCAGTTTACAAGGTCTTCCGGAATAAGAGCAAATATTTGAA
GCCCGGTACTTTTGTTTCCTTGGCGGGGCCTTCGTAACCAGAAATTTTTC
TAGAAAAAAATTGTTCTGGTTAACTTCTACCAATGGGATCGTTCTCACGT
ATTTTCCGCCTGCGCCTTAACATCTCCCTGTTCTAAAAAACCTTTTTCCT
CTTCTCCCACGACACTTTCTTCTTTTTN
TTTTTTCTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGTGTGCAAACCTC
CTGACTTTTACCTTTGTGGTATGGATAAATGTGAAGTGGGTAGATAACTT
GTTCAAATATATATATATATATACCCCAACCCTGCTAGAAAATGCTTATT
TAATGTCAATGCAGAACTCATTGGTTATTGTTAGGGCCTTGTGAAGGTTT
GCATACGCTTGGCCAAGGGAATGGCACTGTCGGGAGATATGGCTTTGTTG
GACTAGGTGTGGCCATGTGGGAGTGTTCTTTAATACCCTGTCCTAGATGC
CTGGGAGTACTCTGCTAGCATCCTTTAGATGAAGATGTAGAACTTCCAGC
TCCTCCTGCACCATGCCTGCCTGGATGCTACCATTTCCTGCCGTGATGAT
AATAGACTGAACCTCTGAACCCTGTAAATCAGCCCCAACTAAATGTTGTC
CTTATAAGACTTGCCTTGGTCATAGTGTCTGTTCACAGCAGTAAAACCCT
AATTGAGACAGGCCTGTTGCTGGATCTTCTTTTTGGATTTCAAGAAATGT
GGTGAAGTGTTCCCCAAATGTCTTCCTTTTACTCACATTTCTTTTTCATC
TTTTGTGTTTCTTTTTTTTAATCCCCTCTTATAACAAGCCTTCGATCCCT
GTTTTTATTACTTTATTTTATCTCTGAAAAAATCTTCCTCTCCTCTTTAT
TCCAAAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_h22.b1 MSMg01no363_h22.b1 CHROMAT_FILE:
MSMg01no363_h22.b1 PHD_FILE: MSMg01no363_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:13 2005
         (507 letters)



>mm_chr10_13441186_13442092
          Length = 907

 Score =  866 bits (448), Expect = 0.0
 Identities = 478/502 (95%), Gaps = 22/502 (4%)
 Strand = Plus / Plus

                                                                       
Query: 28  gaattctgcctgagaaagcacagttctattgatgtgtctcaacatgctggtagagttgct 87
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gaattctgcctgagaaagcacagttctattgatgtgtctcaacatgctggtagagttgct 287

                                                                       
Query: 88  ttcaagggatgaaagcctgactggactcaagcttttatgaacccctctagctacactcac 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttcaagggatgaaagcctgactggactcaagcttttatgaacccctctagctacactcac 347

                                                                       
Query: 148 tagagacctgcctcccccttcccttcttcgtttacttacaaaatcccaattataaaaagc 207
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 348 tagagacctgcctcccccttcccttcttcatttacttacaaaatcccaattataaaaagc 407

                                                                       
Query: 208 agaaccaccacacagcacttaatgttgcagtgatgaatatttacgtatgaagtgatgaat 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 agaaccaccacacagcacttaatgttgcagtgatgaatatttacgtatgaagtgatgaat 467

                                                                       
Query: 268 atttaggacctcagttgctcattaaagcgcacactttaaaaataatctccatctgtagac 327
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 468 atttaggacctcagttgctcattaaagcgcacactttaaaaatcatctccatctgtagac 527

                                                                       
Query: 328 actcctaggtgcaggtgagaatgagaacacacagaggggttatcaaggtttattccagtt 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 actcctaggtgcaggtgagaatgagaacacacagaggggttatcaaggtttattccagtt 587

                                                                       
Query: 388 gacagggcttaaaagcacgtgtgtgtgtgtgtgtgtgtgtgtgtgt-------------- 433
           ||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct: 588 gacagggcttaaaagcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 647

                                                                       
Query: 434 --------atctaaagaggaatgaaatagttccgtgtcctcatgacactattgtacccag 485
                   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gtgtgtgtatctaaagaggaatgaaatagttccgtgtcctcatgacactattgtacccag 707

                                 
Query: 486 aaccttaacaatgactccagat 507
           ||||||||||||||||||||||
Sbjct: 708 aaccttaacaatgactccagat 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)