BAC Information

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BAC

Clone NameMSMg01-366J19
Chromosome10 (Build37)
Map Location 91,855,744 - 91,856,208
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041799, LOC667203
Downstream geneLOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366J19.T7 (MSMg01no366_j19.b1)MSMg01-366J19.TJ (MSMg01no366_j19.g1)
ACCAG474284AG474285
length623767
length of high quality
(start - end)
---466 (79 - 544)
definitionCHROMAT_FILE: MSMg01no366_j19.b1 PHD_FILE: MSMg01no366_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:30 2005CHROMAT_FILE: MSMg01no366_j19.g1 PHD_FILE: MSMg01no366_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAGAGGGAGCACCGACGAGAAGTGCGAGAGCAGAGGGAGAGAGGCCTC
CTGGACTATCTGAAGAAACATATACTGGTAGCTGGCTTGTCCTCTATTTA
ATCTGTTTCAAACATCTTCTCCCGTCTCTCAAACCTTTCGCCTCTGTCCC
AAANACATCTGAATGGAAGGAAACCGCTGAAACAGTCCCCCCACCCCTTG
GGATGATTTCCCCGGCCCCCCCCGGAAATTTTTTTTTAAAAAGGGGAAAA
AAAAAAAATTTGGGGGTGCCCCCCAAAAAAAACCCCCGGGAAAAAAACCC
CCNGAGGGGGGGGGGGCCCCCCCCCCAAAAAAATTTTTCTCCCTAAAAAT
TTCCCCCCGGCGCCCCCCCCCCNTAAAAAATTTTTTTTTTTTTTTTTTTC
CTTNNNNTNNTCCCTTTTTCCCCCCGCCCCTCTTTTTTTTTTTTNTTTNN
NNNTTTTTTTTCNTTCNNTCCCTCCCTCCCCCTCCCCTCCCCCCCCCCCT
TTCCTTTTTTTCCCTCCTTCTTTTTTTTTTTTTTTTTTTTTTCCTCCCTC
CTCTTCCCCTTCCCTTTTTCCCCTTCTTTCTTTCCTTTTCCCTTTCTTCC
TTTTTTCATCTATGGAGAGAAGA
NNNTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGGGAGAGGGGAAAATATCAC
AATATGTTTAAAAGCATCATTCTTTGGAAGGCAGTATGAGTCACTGAGTG
GTACAGTGCTTGTCTAGTACAAAGCCCTCGATCAGTGGTACAGAGTTTGC
CTAGCATGTGCAAAGCCCTATACAGATCCTTATCACTGTCAATAACAATA
ACAGAAGTAACTCTGGATCTGTGTATACAAAATGCATCATAGGGACTAGG
GTAGAGCTTAATTCATATAGAACTTGCTTTACCAATGGGAGGCTCTAAAT
TTGGTCTCCAGAATTCATGTAAAAAAATGTCAGGTATGGGGGCACATATT
TGCAATTCCAGCTCTGGCAAAGTGGTGACAGGTAAACTACTAGGAACTGT
CTGTCTATCCTAATGAGTGAGTTCCACACCAGTGAGAAACCCTATTTGCA
CTGACACCTAAGGCTTGTCCTCTGGCCTTCCACACATACCCACACAAATG
TACCCATGCACACATATGCACACCCATGCATTTTTTTAAAGGAAGAATGG
AGGGATTCATGTAAAAAGAACATGCTAGTTATGAAAGTCCACAACACTCC
AGGGATGACTTTTATTGCGTGTGGAACTGAGGAACCCCACTCCCCGGGAT
GTGAAATGGATAAATTTTTGAATTCCTCCCAAAAGGAAAGTTGGTGAAAA
TTTTTTTTGAGAAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_j19.g1 MSMg01no366_j19.g1 CHROMAT_FILE:
MSMg01no366_j19.g1 PHD_FILE: MSMg01no366_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:30 2005
         (466 letters)



>mm_chr10_91855544_91856409
          Length = 866

 Score =  886 bits (458), Expect = 0.0
 Identities = 464/466 (99%), Gaps = 1/466 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgggagaggggaaaatatcacaatatgtttaaaagcatcattctttggaaggcagtatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgggagaggggaaaatatcacaatatgtttaaaagcatcattctttggaaggcagtatg 260

                                                                       
Query: 61  agtcactgagtggtacagtgcttgtctagtacaaagccctcgatcagtggtacagagttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcactgagtggtacagtgcttgtctagtacaaagccctcgatcagtggtacagagttt 320

                                                                       
Query: 121 gcctagcatgtgcaaagccctatacagatccttatcactgtcaataacaataacagaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctagcatgtgcaaagccctatacagatccttatcactgtcaataacaataacagaagt 380

                                                                       
Query: 181 aactctggatctgtgtatacaaaatgcatcatagggactagggtagagcttaattcatat 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 aactctggatctgtgtatacaaaatgcatcacagggactagggtagagcttaattcatat 440

                                                                       
Query: 241 agaacttgctttaccaatgggaggctctaaatttggtctccagaattcatgtaaaaaaat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 agaacttgctttaccaatgggaggctctaaatttggtctccagaattcatgtaaaaaa-t 499

                                                                       
Query: 301 gtcaggtatgggggcacatatttgcaattccagctctggcaaagtggtgacaggtaaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtcaggtatgggggcacatatttgcaattccagctctggcaaagtggtgacaggtaaact 559

                                                                       
Query: 361 actaggaactgtctgtctatcctaatgagtgagttccacaccagtgagaaaccctatttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 actaggaactgtctgtctatcctaatgagtgagttccacaccagtgagaaaccctatttg 619

                                                         
Query: 421 cactgacacctaaggcttgtcctctggccttccacacatacccaca 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cactgacacctaaggcttgtcctctggccttccacacatacccaca 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)