BAC Information

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BAC

Clone NameMSMg01-367D23
Chromosome10 (Build37)
Map Location 128,789,112 - 128,789,485
singlet/doubletsinglet
Overlap genenone
Upstream geneCs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782
Downstream geneOlfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4, 5830405N20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367D23.T7 (MSMg01no367_d23.b1)MSMg01-367D23.TJ (MSMg01no367_d23.g1)
ACCAG474766AG474767
length775762
length of high quality
(start - end)		488 (49 - 536)415 (59 - 473)
definitionCHROMAT_FILE: MSMg01no367_d23.b1 PHD_FILE: MSMg01no367_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:20 2005CHROMAT_FILE: MSMg01no367_d23.g1 PHD_FILE: MSMg01no367_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:20 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTATAGGATCATCATAAAGAATTGAGAAGTCATCTATTTGTT
TATATAGCATCACTACAAGGCAGTACATCTTAGGAAATATGCAGAGATCT
GCTCAGAAGGGTGGGCTAATACCTAATGATTGTTATATATGTTTAATAGT
AACAAGAACAGCATATTAATAGCAGGAATCTTTCCTAAAGTGATTTTTAC
CCTGGGCCTTGTTTATGGGAGCAAATCTGTTGTGGATTATTTTAACCCAA
GGCAGACCATCTCAGGAAGATCATCTGTTAGTTGTTAGTCTGTCCTATGA
TAGCTCCTGACATCTTGAAAGATTGTTTTTCTTGAAATTCCACAAAAGTC
ACCCATTTGCCCCACAATATGTTTGAGACATTTAATATACTGATAATTTA
TAGCATCACATGACAATATTTGGTTTAAGCGTTTGTGTCCTTTACAGATA
TGAAAGACCACTGAGATGAAAGTAATGACTTTCTCCCAATGAGTATATAT
AATGTGTGTGTGTACAGTCAAATTACAAATCCCCCGAAAATTGCTACTAT
ACAACATTTATTTTATTTCATGCAATGATTTCTGGGCTGGGAATGAAATA
ATTAAACCTATTCTCTTAAAGACCTTTTATAAAAAATTTGAGAAGTTAGC
TTTGCCAATGGCCCCTTTCTTGTTAATTTAATAAACTTGAAGGGGTTTCG
TTTTTTTGAAAAATTTTCTTTGTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAATGGGTGTTGGATCT
TGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCT
TTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAA
CCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTT
CTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTTTT
GCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGG
ATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGT
TGGGTAGAGCACCTTCTACTTCTATCTTGTGAAATAGTTTGTGCAGAACT
GGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATC
TGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTAATTAATGCTTCTATTT
CTTTATGGGAAATGGGACTGTTTAAAAAGGCCACTCGATTCTGGTTTAAT
CTTTGTAACTGGTATTTGTCTTGAAATTTTCCTTTTTCTCCCGTCTTTCC
CGTTTTGTTGAGATAACTCTTTCCCCAAATAACCTATGTTCTTCTCGCTT
TTCTCTTCCCTACTTTCCTCTCATCCCTCTCTTTCTATTTCTTTTCCTTT
CACTATACCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_d23.b1 MSMg01no367_d23.b1 CHROMAT_FILE:
MSMg01no367_d23.b1 PHD_FILE: MSMg01no367_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:20 2005
         (488 letters)



>mm_chr10_128788598_128789485
          Length = 888

 Score =  571 bits (295), Expect = e-167
 Identities = 355/375 (94%), Gaps = 1/375 (0%)
 Strand = Plus / Minus

                                                                       
Query: 114 tgggctaatacctaatgattgttatatatgtttaatagtaacaagaacagcatattaata 173
           |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 888 tgggctaataactaatgattgttatgtatgtttaatagtaacaagaacagcatattaata 829

                                                                       
Query: 174 gcaggaatctttcctaaagtgatttttaccctgggccttgtttatgggagcaaatctgtt 233
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 828 gcaggaatctttcctaaagtgatttttaccttgggccttgtttatgggagcaaatctgtt 769

                                                                       
Query: 234 gtggattattttaacccaaggcagaccatctcaggaagatcatctgttagttgttagtct 293
           |||||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct: 768 gtggatta-tttaatccaaggcacaccatctcaggaagatcacctgttagttgttagttt 710

                                                                       
Query: 294 gtcctatgatagctcctgacatcttgaaagattgtttttcttgaaattccacaaaagtca 353
           ||| |||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 709 gtcttatgatggcttctgacatcttgaaagattgtttttcttgaaattccataaaagtca 650

                                                                       
Query: 354 cccatttgccccacaatatgtttgagacatttaatatactgataatttatagcatcacat 413
           ||||| | || ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 649 cccatgtaccacacaatatgtttgagacatttaatatattgataatttatagcatcacat 590

                                                                       
Query: 414 gacaatatttggtttaagcgtttgtgtcctttacagatatgaaagaccactgagatgaaa 473
            ||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 589 aacaatgtttggtttaagcatttgtgtcctttacagatatgaaagatcactgagatgaaa 530

                          
Query: 474 gtaatgactttctcc 488
           |||||||||||||||
Sbjct: 529 gtaatgactttctcc 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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