BAC Information

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BAC

Clone NameMSMg01-367F23
Chromosome10 (Build37)
Map Location 56,627,874 - 56,628,351
singlet/doubletsinglet
Overlap genenone
Upstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355
Downstream geneLOC100042628, EG629739, LOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367F23.T7 (MSMg01no367_f23.b1)MSMg01-367F23.TJ (MSMg01no367_f23.g1)
ACCAG474860AG474861
length760747
length of high quality
(start - end)		516 (52 - 567)480 (80 - 559)
definitionCHROMAT_FILE: MSMg01no367_f23.b1 PHD_FILE: MSMg01no367_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:31 2005CHROMAT_FILE: MSMg01no367_f23.g1 PHD_FILE: MSMg01no367_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCACCTGACGAATACTGAATGGCAGAGAAGCACTTGAAA
AAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCT
GAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTT
CCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCC
TGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGGACC
TAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACA
CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTA
GCCAAATGGATGGACCTGGTAGGCATCATCCTGAGTGAGGTAACACATTC
TCCAAGAAACTCACACCATATGTATTCCCTGATAAGGGGATATTAGCCCC
CAACCCAGGAAACCCCAGATATTTAATAATATTTGTTTTACCCCTGGATT
TCTCTAAAAAAGACGATCGGAGTTGTGGACCCTATTGCCTCCCCCCTAAA
ATTTGGAACA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTGTTGGTGGAATGATA
AATTAGCTCAAGGACTTTGGGGAATATTTTGTCAAAATCAATCTAAAATT
GGAAAGTGCAGTCTTAGAACTACAAGAACACCTCAAGCAAGCTATGGTAT
TTGCATTCAAACTTGTGTTTATAAAAACAATCAAATTAGCATTGCTTGAG
CAGTGGATAGCTGGTAAAGACATAAAGCAACCAAAAGGAAGAGCGCTAGT
GTGTGTCATATTCAAACTTCTGCAAGGTGGGATAGGTCACATCGAAAGAA
CAATTACAAAATATCTATATTTATGTGAAAAGAAAGTTATAAAGTGGTAT
GTATTAAGTAGCTTCATATTTATATAGATGCCTGGCCTAAGACTCCTTTT
CTCTCTGGCTCCCTCCCTCTCTTTCCACCACATCTCTCACAACCACACCA
AAGATATAAATGGATTAAATGATATAGACAATATATAAATTTTAGACTAA
AATCCAGAAAATTCCTTAACAGGAATTAAAATTTTTCCATTTTAAAAGGT
TATATATTTGTATGGNGATTTAATATCTAATACCAGCAAAATAAACTATA
AAATAATTTTAAACCACCCCCAGCTCATGGTTTTTCAAAACAAATTCTAA
ATTTTAGCACATCTTTCTTTTTAAATGGAAAAAATGATCATAAGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_f23.g1 MSMg01no367_f23.g1 CHROMAT_FILE:
MSMg01no367_f23.g1 PHD_FILE: MSMg01no367_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:31 2005
         (480 letters)



>mm_chr10_56627674_56628551
          Length = 878

 Score =  870 bits (450), Expect = 0.0
 Identities = 472/480 (98%), Gaps = 2/480 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcctgttggtggaatgataaattagctcaaggactttggggaatattttgtcaaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tttcctgttggtggaatgataaattagctcaaggactttggggaatattttgtcaaaatc 619

                                                                       
Query: 61  aatctaaaattggaaagtgcagtcttagaactacaagaacacctcaagcaagctatggta 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aatctaaagttggaaagtgcagtcttagaactacaagaacacctcaagcaagctatggta 559

                                                                       
Query: 121 tttgcattcaaacttgtgtttataaaaacaatcaaattagcattgcttgagcagtggata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tttgcattcaaacttgtgtttataaaaacaatcaaattagcattgcttgagcagtggata 499

                                                                       
Query: 181 gctggtaaagacataaagcaaccaaaaggaagagcgctagtgtgtgtcatattcaaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 498 gctggtaaagacataaagcaaccaaaaggaagagcgctagtgtgtgtcatattcaaaatt 439

                                                                       
Query: 241 ctgcaaggtgggataggtcacatcgaaagaacaattacaaaatatctatatttatgtgaa 300
           ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctgtaaggtgggataggtcacattgaaagaacaattacaaaatatctatatttatgtgaa 379

                                                                       
Query: 301 aagaaagttataaagtggtatgtattaagtagcttcatatttatatagatgcctggccta 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaaaaagttataaagtggtatgtattaagtagcttcatatttatatagatgcctggccta 319

                                                                       
Query: 361 agactccttttctctctggctccctccctctctttccaccacatctctcacaaccacacc 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 318 agactccttttctctctggctccctccctctctttccatcacatctctcacaaccacacc 259

                                                                       
Query: 421 aaagatataaatggattaaatgatatagacaatatataaattttagactaaaatccagaa 480
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 258 aaagatataaatggattaaatgatat--acaatatataaattttagactaaaatccagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 878
Length adjustment: 10
Effective length of query: 470
Effective length of database: 868
Effective search space:   407960
Effective search space used:   407960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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