BAC Information

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BAC

Clone NameMSMg01-367N12
Chromosome10 (Build37)
Map Location 120,249,251 - 120,460,225
singlet/doubletdoublet
Overlap geneMsrb3, LOC100043488, Lemd3
Upstream geneGrip1, Helb, Irak3, Tmbim4, 1190005P17Rik, Hmga2, LOC100042902
Downstream geneWif1, LOC100042911, 4930505D03Rik, LOC100043498, Gns, Rassf3, LOC100043500, Tbk1, Xpot, D930020B18Rik, BC048403, Srgap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367N12.T7 (MSMg01no367_n12.b1)MSMg01-367N12.TJ (MSMg01no367_n12.g1)
ACCAG475216AG475217
length748712
length of high quality
(start - end)
509 (61 - 569)558 (58 - 615)
definitionCHROMAT_FILE: MSMg01no367_n12.b1 PHD_FILE: MSMg01no367_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:07 2005CHROMAT_FILE: MSMg01no367_n12.g1 PHD_FILE: MSMg01no367_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,249,251 - 120,249,761)(120,459,668 - 120,460,225)
sequence
NGGGTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCCGTCCTGATTCGCGTCTCCTCCCATGCACGCTGTGCA
TGCCTTCTTTCCGTTCCACTTCCTCTTAGCTTTTAATCAGACGTTTTTCA
CTGGTTTCATGACAGAGATTAGAGTGTAAACTGCCCTGCCTATTTACCAC
AGGATCTCGTTATTTACTGTGTAGATAATCCTAGAGCTCTACCAGAAGCT
GAAGCCAATACAACATGAAGGACTTTAGTCTCACCCCCGCCCCGGCCCCC
GGCCCTCAAAGAAAGGAAATCTAATGTAGGCATTTTGTCTCTTCCCACCA
ACAATCCCAGGGGCAGCTTCCCCCAAGCATCCTCACCAACTACTACCTTC
TAGCCAGATGTCAGAAAAAGATAAAAGCCCATAACCCCATGGATATATAA
ACATTAAGCAACATGCCCCAGAGAACCAAACATTTAAAAAAGATTTTTAA
AAAAAATCTGAGACAAATGACAATGAAAACACCAAAGTTTATGGGATAAT
ATAGCAAAAGCAGTTCTAAGGGCGGTGGAAAGGGTCTAGAAATAAACAAC
TACTTCTAGAGAGAAAGACGATACCGTAGTACACACCTGTCATCTCCCAA
CCTGGGGTCTCGTGTTGCGTAAAATGTTCACTTTTCTTTTTTCAAGGGGC
CTATTAGCAAACCCTCATGAATATGAATACCTCCCATCCCATTAATTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACGATCTTTGTGCTTCAACCTTCTCTGTGCTTAGTCATTGGTG
CAAGCCGCTACACCAGGTGGAAACATATTTTAAGAGTCATGGGCTGACTC
CTTCCTATAATCCCAGCAATCAAGAAGCTGAGGCAGGAGCATTGTGGTGA
GTTTGAGGCCACTCTGGGTTGTAGCATGACCTTCTGCCTCCAAACAGAGA
AAAACAAAAGGCCTCAGTTGAGTTAAAGGTAAAAGAAAGGAAAAAATACT
CACCAAGCCAAAGCTGTTCTTAAGGAAACTGGAACGACTTCGTTGATGCC
AAACTAAATCCACTTCAGGATAAGAGCTATTAACAGAGACTGTGGGTAGT
GCAGGGAGACGAATATTTGGCAGTTTGTTATGCTAGTCACTCTACTTTTG
TATATGCTTGGCAAGTCCATTAATAGAAATATTAATAATTAAGAGGGGAA
ACAATTATGTGTTCAAACAAAGCCTAGAGATGCAGCCCTGGGGTAGAGCC
TTTGCCTCACATGTACAGGGACCTGTGTTTAGTCCCCAGTGCAGGAAGAA
ACCAAACAAGAAAAGTGGGGAGGACTGAACCAATGTAATGACGGCTCATT
TCTATTCATTTCTATATGAAAGAAGCCTTTACTGCGCTTTCCATTAACAG
CCTCCCACTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_n12.b1 MSMg01no367_n12.b1 CHROMAT_FILE:
MSMg01no367_n12.b1 PHD_FILE: MSMg01no367_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:07 2005
         (509 letters)



>mm_chr10_120249051_120249959
          Length = 909

 Score =  920 bits (476), Expect = 0.0
 Identities = 503/512 (98%), Gaps = 4/512 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccgtcctgattcgcgtctcctcccatgcacgctgtgcatgccttctttccgttccact 60
           |||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 201 tcccgtccagattcgcgtctcctcccatgcacgctgtgcgcgccttctttccgttccact 260

                                                                       
Query: 61  tcctcttagcttttaatcagacgtttttcactggtttcatgacagagattagagtgtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctcttagcttttaatcagacgtttttcactggtttcatgacagagattagagtgtaaa 320

                                                                       
Query: 121 ctgccctgcctatttaccacaggatctcgttatttactgtgtagataatcctagagctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgccctgcctatttaccacaggatctcgttatttactgtgtagataatcctagagctct 380

                                                                       
Query: 181 accagaagctgaagccaatacaacatgaaggactttagtctcacccccgccccggccccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accagaagctgaagccaatacaacatgaaggactttagtctcacccccgccccggccccc 440

                                                                       
Query: 241 ggccctcaaagaaaggaaatctaatgtaggcattttgtctcttcccaccaacaatcccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggccctcaaagaaaggaaatctaatgtaggcattttgtctcttcccaccaacaatcccag 500

                                                                       
Query: 301 gggcagcttcccccaagcatcctcaccaactactaccttctagccagatgtcagaaaaag 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggcagcttcccctaagcatcctcaccaactactaccttctagccagatgtcagaaaaag 560

                                                                       
Query: 361 ataaaagccc-ataaccccatggatatataaacattaagcaacatgcccc-agagaacca 418
           |||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 ataaaagcccca-aaccccatggatatataaacattaagcaacatgcccccagagaacca 619

                                                                       
Query: 419 aacatttaaaaaagatttttaaaaaaaa-tctgagacaaatgacaatgaaaacaccaaag 477
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 620 aacatttaaaaaagatttttaaaaaaaaatctgagacaaatgacaatgaaaacaccaaag 679

                                           
Query: 478 tttatgggataatatagcaaaagcagttctaa 509
           ||||| ||||||||||||||||||||||||||
Sbjct: 680 tttataggataatatagcaaaagcagttctaa 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no367_n12.g1 MSMg01no367_n12.g1 CHROMAT_FILE:
MSMg01no367_n12.g1 PHD_FILE: MSMg01no367_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:07 2005
         (558 letters)



>mm_chr10_120459481_120460438
          Length = 958

 Score = 1040 bits (538), Expect = 0.0
 Identities = 553/558 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acgatctttgtgcttcaaccttctctgtgcttagtcattggtgcaagccgctacaccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 745 acgatctttgtgcttcaaccttctctgtgcttagtcattggtgcaagccactacaccagg 686

                                                                       
Query: 61  tggaaacatattttaagagtcatgggctgactccttcctataatcccagcaatcaagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggaaacatattttaagagtcatgggctgactccttcctataatcccagcaatcaagaag 626

                                                                       
Query: 121 ctgaggcaggagcattgtggtgagtttgaggccactctgggttgtagcatgaccttctgc 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 625 ctgaggcaggagcattgtggtgagtttgaggccactctgggttgtagcgtgaccttctgc 566

                                                                       
Query: 181 ctccaaacagagaaaaacaaaaggcctcagttgagttaaaggtaaaagaaaggaaaaaat 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctccgaacagagaaaaacaaaaggcctcagttgagttaaaggtaaaagaaaggaaaaaat 506

                                                                       
Query: 241 actcaccaagccaaagctgttcttaaggaaactggaacgacttcgttgatgccaaactaa 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 505 actcaccaagccaaagctgttcttaaggaaactggaacgacttcattgatgccaaactaa 446

                                                                       
Query: 301 atccacttcaggataagagctattaacagagactgtgggtagtgcagggagacgaatatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atccacttcaggataagagctattaacagagactgtgggtagtgcagggagacgaatatt 386

                                                                       
Query: 361 tggcagtttgttatgctagtcactctacttttgtatatgcttggcaagtccattaataga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggcagtttgttatgctagtcactctacttttgtatatgcttggcaagtccattaataga 326

                                                                       
Query: 421 aatattaataattaagaggggaaacaattatgtgttcaaacaaagcctagagatgcagcc 480
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 aatattaataattaagaggggaaacaattatgtgttcaaacaaagcctggagatgcagcc 266

                                                                       
Query: 481 ctggggtagagcctttgcctcacatgtacagggacctgtgtttagtccccagtgcaggaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctggggtagagcctttgcctcacatgtacagggacctgtgtttagtccccagtgcaggaa 206

                             
Query: 541 gaaaccaaacaagaaaag 558
           ||||||||||||||||||
Sbjct: 205 gaaaccaaacaagaaaag 188


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)