BAC Information

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BAC

Clone NameMSMg01-367P12
Chromosome10 (Build37)
Map Location 117,414,845 - 117,415,253
singlet/doubletsinglet
Overlap genenone
Upstream geneBest3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b
Downstream geneMdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng, LOC100043478, LOC100042850, Dyrk2, LOC668223
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367P12.T7 (MSMg01no367_p12.b1)MSMg01-367P12.TJ (MSMg01no367_p12.g1)
ACCAG475309AG475310
length742722
length of high quality
(start - end)
409 (167 - 575)82 (122 - 203)
definitionCHROMAT_FILE: MSMg01no367_p12.b1 PHD_FILE: MSMg01no367_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:17 2005CHROMAT_FILE: MSMg01no367_p12.g1 PHD_FILE: MSMg01no367_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCANAGAGGTGCGCACGGGAGTAAGAATTATTATAATTCTTGTC
TATGTTCTATGGACAGGATAAAGAGGTTTCCTAAGGTTTCTGACTCTCGT
TCAGCAGGAAGTGAAGATTTTTATAATAGTGCACACGATAGCTCTTGGTT
CTCTATGAATAGGGTTCTGAATTTTATTCTCTTTTCCAGCTACATGGCTG
ATGTAAAAACATATCAGGGGCCAAAGGGATGTTGCAGCCGTTAGGAGCCA
GTGCTGGTCTTGCAGAGGACCCAGGTGGGTTCCCAGAAACCATGTCGGAC
AGTTCACACCCATTGGTAACTCCAGTTCAAGAGGATCCAACACCCTCTTT
TGGCCTCTACTGGCACCTGAGCTTACTTACATGTGCATATACCCACACAT
AGTCACACAAATAGACACATAATTTAAGCCAATTCCTTAACACTATATAA
TAAGATAAAAATTCTTATAACAATAGCAGTACTATGTAGTTGCTTAGCTA
TAAACTTATACATCCTATTTGATTAAAAAGCCCTGACCTTGCGAGATATA
AATTGTAACTGTTTTTAGACGTGAGGCAATTATGACGCTGGATAGGTTTA
TTATTTTCCTTAGATGCTATGAGTGTTGCTAGGACCTGCTCTATACTGTC
TTGATTACATATCTGCTCCATATAGGGTTTCTAACATTTACT
TGGCGGCCGCCTGTTTCCCCACXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACGTAAGAAGGCCTAGATTTAACTCACTGGACAGCAGAATCTTG
GACCAAGTTATTACATTTGTTTTATTTATAAAGCAAACATGATTCTGCTC
AAATTGCATGCTATTCCCTACTAATACACCAAACATACTTATTATGTTCT
TAGTTGCTCTTCAAATGTTCTTGGAATTCAGACTCCCAAAGGGACCCAGA
GGTGGACCAAAGATTAGCATGTAAACCATGTTTTATGTGTATGCACACAT
AGGCACTTGTCCTGGGTTCTCAACCAGGAGGACAGAGAGAAAGTCAGCTC
CTGGAGTGGATGTGGAGCTGCAAAGAATAGGAGAGTGTGCATCTGGGGCA
AAGCTTTTACAGGGATTTAAATGAAAATGTTCACTCCTGATTGTGGCTCA
TGAGATGCTAATTTAGACAAAAACACAAAGTCTTCCAGGTTATTATTGTA
CCCATTTGGTCATATTGTACCTCTAACACATATGCTCAAAAATATATAAA
TAAATAAATAAATAAATAACTAAATAAATACATATCTAACTAAGGTATAC
TCAAGTCAAAGATGGTGGTTCGTATCTAATACAAAGTACAGTCCGGTTTC
TGCCCAGTCAATACTACCAAGAGAGATCCCTGTCAGGTCTGCTTAGAGAG
TTGCTTCTAAATATTTCCATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_p12.b1 MSMg01no367_p12.b1 CHROMAT_FILE:
MSMg01no367_p12.b1 PHD_FILE: MSMg01no367_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:17 2005
         (409 letters)



>mm_chr10_117414645_117415453
          Length = 809

 Score =  760 bits (393), Expect = 0.0
 Identities = 405/409 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttataatagtgcacacgatagctcttggttctctatgaatagggttctgaatttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttttataatagtgcacacgatagctcttggttctctatgaatagggttctgaatttta 260

                                                                       
Query: 61  ttctcttttccagctacatggctgatgtaaaaacatatcaggggccaaagggatgttgca 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ttctcttttccagctacatggctgatgtaaaaacatatcaggtgccaaagggatgttgca 320

                                                                       
Query: 121 gccgttaggagccagtgctggtcttgcagaggacccaggtgggttcccagaaaccatgtc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccattaggagccagtgctggtcttgcagaggacccaggtgggttcccagaaaccatgtc 380

                                                                       
Query: 181 ggacagttcacacccattggtaactccagttcaagaggatccaacaccctcttttggcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacagttcacacccattggtaactccagttcaagaggatccaacaccctcttttggcct 440

                                                                       
Query: 241 ctactggcacctgagcttacttacatgtgcatatacccacacatagtcacacaaatagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctactggcacctgagcttacttacatgtgcatatacccacacatagtcacacaaatagac 500

                                                                       
Query: 301 acataatttaagccaattccttaacactatataataagataaaaattcttataacaatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 acataatttaagccaattccttaacactatataataagataaaaattcttataacgatag 560

                                                            
Query: 361 cagtactatgtagttgcttagctataaacttatacatcctatttgatta 409
           ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 cagtactatgtagttgcttagctgtaaacttatacatcctatttgatta 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)