BAC Information

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BAC

Clone NameMSMg01-368C20
Chromosome10 (Build37)
Map Location 78,174,402 - 78,174,764
singlet/doubletsinglet
Overlap geneCasp14
Upstream geneKrtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890
Downstream geneCcdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368C20.T7 (MSMg01no368_c20.b1)MSMg01-368C20.TJ (MSMg01no368_c20.g1)
ACCAG475467AG475468
length731730
length of high quality
(start - end)		349 (45 - 393)366 (73 - 438)
definitionCHROMAT_FILE: MSMg01no368_c20.b1 PHD_FILE: MSMg01no368_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:33 2005CHROMAT_FILE: MSMg01no368_c20.g1 PHD_FILE: MSMg01no368_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCTTTCCCTACATCCTTGCCTATATTTGTGACAGTGGTTGTCTTG
GAGACAACTGTTCTGACCAGGGTAAGATGGCATTTCAAAGCAGCAACCAG
ACCTCCCAGAGCTCCCAGGGACTAAACCACCAACCAAAGAGGGACCCATG
GCTCCAACTGTATATGTATCAGAGGATGGCCTTGTCTGGCATCAGTGTGA
GGGGGGCCCTTGGTTCTGTGGAGGCTCGATGCTCCAGCATAGGGGAATGC
TAGGGCAGTGATGTGGGAGTGAGTGGGTGGGAGGGGGAGCACCCTCATAN
AAGCAGAGGCATGGGGGATAGAATAGGGGGTTTGTAGAGAAGATATTGGT
AAGGGGAATTGACTCACCCGCACATCCATTATTAACTTATCCGTAATATT
CAATATCTTAAACTCTTTCTCCTGTTTCTTTTGAATCTATATATTTTTTC
TTTATCAACAATTTTATATATTTGTTTGTTTCACTTTTTCTACCTACCCG
GATTATTTCCTCTTTTATTTCGCACAGCACAAATACTTTTCTTCATGTAT
ATTTTCTCATGCCCTCATCTCCCATCCTTAAACCTCCCTACTAATACTTC
ATATTATATTCCTTCTTATTTCCTTTTACTTATCTATGTTTATTATCATT
TGTTACTCGTGGCATTTTTGTTCTCATCCTG

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTAAACATCTGTCAAACTTTGCAAGAA
ATGTGTTAGAATCTTTGCTCTGAGCCTTACTTTGGGGGGAAAAATAGAAG
GAGTTATGAATTTGCTTTCTTTTTCCCAATAACTAACTGTGTGTNGAGTT
TACCATGGGAAAGAAGACTCAGGACCCTTATCCTGACTCTTACATATAAG
TAGATATTAGGATTTGTAAAATTACAGGTCACACTTATATACCAGACGGC
TATATGTTATATGTTTTCCAAGGGAATATCTGGGAATACTTTGTCAAAGC
TACATGTTGAAGAAAATCTTGTTACATAACCTGCGGATTATGACTCCTTT
GGACATGGAATGATCCTTTCTTAGGGGTCACATATCAGATAACCTGGATA
CCAGATATTTACATTATTATTCAATACAGTAGCAAAATCCCAGGTATGAA
GCAGCAATGAAATATTTTTATAGTCAAGGGGTCACCATAACCTGAGGAAC
CGGATTAAAAGGGTTGCAGCCTTTACGAAGGGTGAAAAACTGGCTTTAGA
AAAAATGGCCACGGCCTCCTATTTGGGGGGCCCCGGGAATTACTTTACTA
ATTTAAGCCAATCTTTCCCCCCCCCACAAAATTTCAAAAAAAATTCCCCA
AGGTTTTTCTTTTTCCCATTCCCCGAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_c20.g1 MSMg01no368_c20.g1 CHROMAT_FILE:
MSMg01no368_c20.g1 PHD_FILE: MSMg01no368_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:33 2005
         (366 letters)



>mm_chr10_78174202_78174964
          Length = 763

 Score =  677 bits (350), Expect = 0.0
 Identities = 362/366 (98%), Gaps = 3/366 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaaacatctgtcaaactttgcaagaaatgtgttagaatctttgctctgagccttactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agtaaacatctgtcaaactttgcaagaaatgtgttagaatctttgctctgagccttactt 504

                                                                       
Query: 61  tggggggaaaaatagaaggagttatgaatttgctttctttttcccaataactaactgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 503 tggggggaaaaatagaaggagttatgaatttgctttctttttcccaatagctaactgtgt 444

                                                                       
Query: 121 gtngagtttaccatgggaaagaagactcaggacccttatcctgactcttacatataagta 180
           || ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gt-gagtttaccat-ggaaag-agactcaggacccttatcctgactcttacatataagta 387

                                                                       
Query: 181 gatattaggatttgtaaaattacaggtcacacttatataccagacggctatatgttatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gatattaggatttgtaaaattacaggtcacacttatataccagacggctatatgttatat 327

                                                                       
Query: 241 gttttccaagggaatatctgggaatactttgtcaaagctacatgttgaagaaaatcttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gttttccaagggaatatctgggaatactttgtcaaagctacatgttgaagaaaatcttgt 267

                                                                       
Query: 301 tacataacctgcggattatgactcctttggacatggaatgatcctttcttaggggtcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tacataacctgcggattatgactcctttggacatggaatgatcctttcttaggggtcaca 207

                 
Query: 361 tatcag 366
           ||||||
Sbjct: 206 tatcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 763
Length adjustment: 9
Effective length of query: 357
Effective length of database: 754
Effective search space:   269178
Effective search space used:   269178
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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