BAC Information

Click to search

BAC

Clone NameMSMg01-368C23
Chromosome8 (Build37)10 (Build37)
Map Location 10,497,230 - 10,497,74060,806,250 - 60,806,421
singlet/doubletsingletsinglet
Overlap geneMyo16
Upstream geneTmem28, Lig4, Abhd13, Tnfsf13b
Downstream geneLOC100040008, LOC384782, LOC100040507, LOC665306, Irs2, Col4a1, Col4a2, Rab20, 0710008K08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368C23.T7 (MSMg01no368_c23.b1)MSMg01-368C23.TJ (MSMg01no368_c23.g1)
ACCAG475472AG475473
length752805
length of high quality
(start - end)		517 (38 - 554)174 (76 - 249)
definitionCHROMAT_FILE: MSMg01no368_c23.b1 PHD_FILE: MSMg01no368_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:33 2005CHROMAT_FILE: MSMg01no368_c23.g1 PHD_FILE: MSMg01no368_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:34 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,497,230 - 10,497,740)(60,806,250 - 60,806,421)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAC
ATCCTTGGCAGTGAGAGCAGGGACAGGGTAGCCTTCAAGTCTTGTTGTAA
GAAGGGGTCCTCTGTACCCAGAGTCCCATGCTGAGCTTTAAGATCAACTC
TGTCTGCTAAGAGTCTCCTGATGCACCTCCTAATGACATCACATCAATGT
ACACACACCTAGGAACTGTCAAAATACTTCACCTGGTCTTCAAGTTCCCA
GAACAATTTCTGATTCCATGCCCTCTTGGTGGCTGACAGTATTTCTTGAT
TTCCAGGAAAAGCTAAGACTCTCATACCAAAACATCTCTGGGCTCTTACT
TCCTTTTCAAACAGCTTTCTGTTCCATTGTTTGTGCTCTACTAAGAAGGA
GACCTTGGTATGACCAAGATGGCCTCCCCACTAGGATTGTCCCTGCCTTC
TGACGGTGGCTATACCCCTGAGTTTGCTTCTTCAGCCCCCACTTTTTTAT
ACCTTATTCATAGTATTATTTGTCAGTAGTACAAAGTACTATAATAACTA
ANATAAGAAAAAGACCAAAATTTAGTTTCTGACTTCTATATTCTCATCTG
AATTCATGGCAACGCCACTGGTAGATGGGAATACATTTACCCAGAACCAC
TGGGATGCTGGCATGTAGGAAACTTTATATATGGGTCTAGGCTATAATAC
AACCCATTTGCTACTGAGAACCCATAATTCAATGAAAACCCCCTTACCCC
CA

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTGGGGCCCTTGGTCCCTGGGGAC
CTCATCGCCAAGGGCTCCCTGGTGAGTAGCTGAGTGTCTGTGGAGTGGGT
TGGCTGGCCCTTGGCCCCATGGAGTTCTAGATTCCTGTAGAGCTAGGGAA
GTCTTGCCCCGGGGGTGGGGCGGGGGTGGGGATGGCGAGGGAGGTGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_c23.b1 MSMg01no368_c23.b1 CHROMAT_FILE:
MSMg01no368_c23.b1 PHD_FILE: MSMg01no368_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:33 2005
         (517 letters)



>mm_chr8_10497027_10497943
          Length = 917

 Score =  988 bits (511), Expect = 0.0
 Identities = 511/511 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccacatccttggcagtgagagcagggacagggtagccttcaagtcttgttgtaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ggaattccacatccttggcagtgagagcagggacagggtagccttcaagtcttgttgtaa 655

                                                                       
Query: 64  gaaggggtcctctgtacccagagtcccatgctgagctttaagatcaactctgtctgctaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gaaggggtcctctgtacccagagtcccatgctgagctttaagatcaactctgtctgctaa 595

                                                                       
Query: 124 gagtctcctgatgcacctcctaatgacatcacatcaatgtacacacacctaggaactgtc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gagtctcctgatgcacctcctaatgacatcacatcaatgtacacacacctaggaactgtc 535

                                                                       
Query: 184 aaaatacttcacctggtcttcaagttcccagaacaatttctgattccatgccctcttggt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aaaatacttcacctggtcttcaagttcccagaacaatttctgattccatgccctcttggt 475

                                                                       
Query: 244 ggctgacagtatttcttgatttccaggaaaagctaagactctcataccaaaacatctctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggctgacagtatttcttgatttccaggaaaagctaagactctcataccaaaacatctctg 415

                                                                       
Query: 304 ggctcttacttccttttcaaacagctttctgttccattgtttgtgctctactaagaagga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ggctcttacttccttttcaaacagctttctgttccattgtttgtgctctactaagaagga 355

                                                                       
Query: 364 gaccttggtatgaccaagatggcctccccactaggattgtccctgccttctgacggtggc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gaccttggtatgaccaagatggcctccccactaggattgtccctgccttctgacggtggc 295

                                                                       
Query: 424 tatacccctgagtttgcttcttcagcccccacttttttataccttattcatagtattatt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tatacccctgagtttgcttcttcagcccccacttttttataccttattcatagtattatt 235

                                          
Query: 484 tgtcagtagtacaaagtactataataactaa 514
           |||||||||||||||||||||||||||||||
Sbjct: 234 tgtcagtagtacaaagtactataataactaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no368_c23.g1 MSMg01no368_c23.g1 CHROMAT_FILE:
MSMg01no368_c23.g1 PHD_FILE: MSMg01no368_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:34 2005
         (174 letters)



>mm_chr10_60806050_60806623
          Length = 574

 Score =  333 bits (172), Expect = 5e-96
 Identities = 172/172 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggggcccttggtccctggggacctcatcgccaagggctccctggtgagtagctgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agtggggcccttggtccctggggacctcatcgccaagggctccctggtgagtagctgagt 313

                                                                       
Query: 61  gtctgtggagtgggttggctggcccttggccccatggagttctagattcctgtagagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gtctgtggagtgggttggctggcccttggccccatggagttctagattcctgtagagcta 253

                                                               
Query: 121 gggaagtcttgccccgggggtggggcgggggtggggatggcgagggaggtgg 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gggaagtcttgccccgggggtggggcgggggtggggatggcgagggaggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |