BAC Information

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BAC

Clone NameMSMg01-369J12
Chromosome10 (Build37)
Map Location 57,211,071 - 57,211,555
singlet/doubletsinglet
Overlap geneHsf2
Upstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
Downstream geneSerinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369J12.T7 (MSMg01no369_j12.b1)MSMg01-369J12.TJ (MSMg01no369_j12.g1)
ACCAG476541AG476542
length874772
length of high quality
(start - end)
199 (30 - 228)485 (77 - 561)
definitionCHROMAT_FILE: MSMg01no369_j12.b1 PHD_FILE: MSMg01no369_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:22 2005CHROMAT_FILE: MSMg01no369_j12.g1 PHD_FILE: MSMg01no369_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTATACGACTCACTATTCCGAGAGGATCCGCGGAATTCTGCACA
GTTCCTTGCTTTCCCTAATTTGCTCAGTTTGATTTCTTCTTTTCCAACAT
AATATTTTTATTGATTATTGGGAATTTCACATTTTCACATAATGCAACCT
GATCACATTTAATTTCCAGTCTTCCCAGGTCCAACCCACCTCCCTTGTAA
CCTCTCCTTCAGAAGAAGGAGAAGAAGAAGAAGAAGAAGATTATTAATAT
TAATATGAAGATGAAGATTGATGTATTTTTTTCTTCACTCACTTTTCTTT
ATTTTCCCTTTTTTTTTTTTCTCCCCTTTTTTTTTCTTCTTTTTCTGACT
TTTTTTTTTTTTCTTATTATTTAACACATTCTTATATCATTATTCCCCTT
CTGTGTATTATATTCATTATTTCTTTTTTTTTCTTCTTTCTTATTCCTAT
TATATTATTTTTTTCATCTTATATTTTATATTTCTTTTTATAATTTTTTT
AACATCCTTTTATCTTATATCTTTAACTTATTATCTCCTCTTCTTTCCTT
ACCTCTTCTTTATCTCTCATTTTTTATACCCGTTTATTCTTTTATTCCTC
TTTTCTCTTATTTTACTCAATTTTAATACAATATTCCTATTTTATTTTTT
TAACTACCCACTCACTACTTAAAACTATTAATTTCCTCTATTTACTCCCC
CTTCCTTTCCCCCATAATATTATATCTATTATTTTCTTTTTTTTATTTTT
TTATTTCCTCTCATTATATTTTATATTTTTTTTTATCCTTATCCTAATTT
CACTCTCTCTTTCTTTATTTTGTTCCCACTCTTTCCTAAATTATTTCAAC
ACATCTTTTATCTCTCTATTACTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGGAAAAGAGACAGAATAGAAT
TAACAGGGGCTCATGGGGAAGCGCATAGCTCAGTAGTAAGGAGCTTGGAT
GGCATGCTTTAGACCAGATCCTGTTCTCAATACCATCTTTTACTTCCCCA
CTTCCAGAAAGAAAGTCAGAAGGGAAGGAGTACTCAGATTTGGCCTGTGG
AAGATAGTGGAAGATTAGGAGGCATGCTAGTTGCAGATTATATATGGTCA
CATTTTATGTTTGAAATTAAAAGAGATCACTATAGTGTGGAACAAGAATG
CCTTCTCTGGAATCTGGTATATAATAAACTAAATAGGTATTTTTGGAATA
TGGCTGTTGAACTGAAGAGGTTTTACAAATGATTGAAACTCTTCTGATCA
CAAACATTTTGGAGAAGGTATACCAACCAATATTTGAGAATTGTCTTATT
CTGCTTACATTTGGTTAGCCACCTTTAGTCATATGCATATACCTAGTATC
ATAAGGAGTGGCTATATGCAGTACTAGAAACAGAAATATTTCTGAACAGC
ATGGCTTCTGTACTTTAAGACATTCTAATGGAAGTAGTCAATACGTTGGT
AGGTCCTATTTTGGCATTTAGGGTTCTTGAACATTTTTTGACGATATAGT
CACTCGCGTTTAAATAAAGTACTTTTTAACTTTTTCTACCCACCGCGTTT
CGTGCCACTTTCTTTCTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_j12.g1 MSMg01no369_j12.g1 CHROMAT_FILE:
MSMg01no369_j12.g1 PHD_FILE: MSMg01no369_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:22 2005
         (485 letters)



>mm_chr10_57210871_57211755
          Length = 885

 Score =  899 bits (465), Expect = 0.0
 Identities = 480/485 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggaaaagagacagaatagaattaacaggggctcatggggaagcgcatagctcagtag 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 actggaaaagagacagaatagaattaacgggggctcatggggaagcgcatagctcagtag 260

                                                                       
Query: 61  taaggagcttggatggcatgctttagaccagatcctgttctcaataccatcttttacttc 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 taaggagcttggatggcatgctttagaccagatcccgttctcaataccatcttttacttc 320

                                                                       
Query: 121 cccacttccagaaagaaagtcagaagggaaggagtactcagatttggcctgtggaagata 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 cccacttccagaaagaaagtcagaagggaaggggtactcagatttggcctgtggaagata 380

                                                                       
Query: 181 gtggaagattaggaggcatgctagttgcagattatatatggtcacattttatgtttgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggaagattaggaggcatgctagttgcagattatatatggtcacattttatgtttgaaa 440

                                                                       
Query: 241 ttaaaagagatcactatagtgtggaacaagaatgccttctctggaatctggtatataata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaaagagatcactatagtgtggaacaagaatgccttctctggaatctggtatataata 500

                                                                       
Query: 301 aactaaataggtatttttggaatatggctgttgaactgaagaggttttacaaatgattga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactaaataggtatttttggaatatggctgttgaactgaagaggttttacaaatgattga 560

                                                                       
Query: 361 aactcttctgatcacaaacattttggagaaggtataccaaccaatatttgagaattgtct 420
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 aactcttctgatcacaaacattttggagaaggtataccaaccagtatttgagaattgtct 620

                                                                       
Query: 421 tattctgcttacatttggttagccacctttagtcatatgcatatacctagtatcataagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 tattctgcttacatttggttagccacctttagtcatatgcatatacctagtatcataggg 680

                
Query: 481 agtgg 485
           |||||
Sbjct: 681 agtgg 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)