BAC Information

Click to search

BAC

Clone NameMSMg01-370A14
Chromosome10 (Build37)
Map Location 17,427,901 - 17,428,310
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370A14.T7 (MSMg01no370_a14.b1)MSMg01-370A14.TJ (MSMg01no370_a14.g1)
ACCAG476878AG476879
length804776
length of high quality
(start - end)		43 (33 - 75)410 (67 - 476)
definitionCHROMAT_FILE: MSMg01no370_a14.b1 PHD_FILE: MSMg01no370_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:57 2005CHROMAT_FILE: MSMg01no370_a14.g1 PHD_FILE: MSMg01no370_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCCGCGCTCTCCGACGCCTATCGGGAGAGGATCCGCGGAATTCTCTGC
CTTCTTTGCTCATTCCCTATGGCTCTGAATTGTGAACACTGTGACCCATT
TCCTGACCGATCTATCTCATTGATACGTGAGTTTGGAAATAGGAGAAAGG
CCAAGTATGCGGTAATTTTTTTCAGCACGAACACCCTCAGAGAGTTTTCC
CATAGACGGATCCTACAGCCTTGAGTGGCTTGGATCAAGCTGGCGTCCAC
ATAAACATGCCTGCACTGCTCACCTGAATAGTAAGAGAACATAATGCTTC
TATTATCGGCATGTTCACCAACTACCCCTAGGGCTGACTTCTTTAACATA
GTGGCCCGCCCTTCTGGTTACCTGCCTCTGTGCAGCGTATTTCTCCCTCT
GGAGAGTCATCCTGATGGGACTGGCACCGTTGCGCTCCTCGGTTCAGTCG
GGTTTTACCAGCATCCACTCTTCACTGAGTAACCATCCCCTTACTTCGAT
CGGTCTTTACCCCACTTGTTTCTGCGATTTCCCACTACCTTACTTTCTGC
CTCCTAGGCCCCCGTTTCTTCCCCCGTCTCTTCTGTGCAGCTTACTCCTT
CCCTCCCGCTTGCTTTTCTTTTCGCTGTCCACTCCGTTACTATGTCGGTT
TCGCTTCTCCATTTCTGCCGCTTATTCGCCCTTCTTCCTTCCGTTTGTCA
CCCTTGTTTTTCTTCCCCTTGTTCCCTTGCGTCGTCCCACCTCCTCCTTC
ATCATCTTCTTCTGTGCTCGCACGTCCCTCCGTTCTTACATTCTTACCCT
TTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACCCCACCTGAGGCTAAGAGAGGTAGTCGGTGAG
CAAGCAAACAGACCAGCTACATTTTTTCCCAATAAATCTGCCTGACAGGG
AAGTCAGGAGGCTTCCTGTGACTATTTAACATTTTTAAAAGGCAGTGGGG
GTGAAATATGCCTCCAGACCCCACGTACAATTCCTTAGAACAAGAGTTGT
TTTGCTGGTTTCCAAAACCCAGGAAAAGTGTTACCAGTGTCTTCAGAGTT
CTGCATCCTTTTTATCGTTTCAAGGACAGGCCTCGGTAGTCAGCCTCACT
CAGACAGAAAAGAGGAATACATTCCTCCCCTCCCTCCTCTTTCCAACTTT
GAAAAGAACAACTTTCAGAAGATGTAGTAAGACATAAAATGGGGGAGACG
AGCCTCACACCTCCGCGGACAATGCGTTTGGTGAATCCAGGAGCAATGCA
AATTTCTCTTAGCTTCCTGGTGGAGGAAGAGAGGGGGACAATGCTATAGA
AAAGTTCCAAATTAACAAAATCCTATATTTATTGTGCCGTTTCCCTGTGT
TTTCAATACTTTCATTACCTCCGGTGGGCTTTTTTCGTTTTCCTCCCCAC
CCCCTTTTCCTTTTGACTTTCTTTTTTTCCCCTTATTCCTCCTTTTTGCG
CTCCTTCATGTTCTTTTCTCTTTTTCCTCGCGCTTCTTCCTTTTTTTCCT
CCCTCCCCCTCTTCTCTCCCCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_a14.g1 MSMg01no370_a14.g1 CHROMAT_FILE:
MSMg01no370_a14.g1 PHD_FILE: MSMg01no370_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:57 2005
         (410 letters)



>mm_chr10_17427701_17428510
          Length = 810

 Score =  735 bits (380), Expect = 0.0
 Identities = 404/412 (98%), Gaps = 4/412 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accccacctgaggctaagagaggtagtcggtgagcaagcaaacagaccagctacattttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 accccacctgaggctaagagaggtagtcggtgagcaagcaaacagaccagctacattttt 551

                                                                       
Query: 61  tcccaataaatctgcctgacagggaagtcaggaggcttcctgtgactatttaacattttt 120
           |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 550 tcccgataaatctgcctgacagggaagtcagaaggcttcctgtgactatttaacattttt 491

                                                                       
Query: 121 aaaaggcagtgggggtgaaatatgcctccagaccccacgtacaattccttagaacaagag 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 490 aaaaggcagtgggggtgaaatatgcctccagaccccatgtacaattccttagaacaagag 431

                                                                       
Query: 181 ttgttttgctggtttccaaaacccagga-aaagtgttac-cagtgtcttcagagttctgc 238
           ||||||||||||||||||||||||| || |||||||| | ||||||||||||| ||||||
Sbjct: 430 ttgttttgctggtttccaaaaccca-gagaaagtgtt-ctcagtgtcttcagacttctgc 373

                                                                       
Query: 239 atcctttttatcgtttcaaggacaggcctcggtagtcagcctcactcagacagaaaagag 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atcctttttatcgtttcaaggacaggcctcggtagtcagcctcactcagacagaaaagag 313

                                                                       
Query: 299 gaatacattcctcccctccctcctctttccaactttgaaaagaacaactttcagaagatg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gaatacattcctcccctccctcctctttccaactttgaaaagaacaactttcagaagatg 253

                                                               
Query: 359 tagtaagacataaaatgggggagacgagcctcacacctccgcggacaatgcg 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tagtaagacataaaatgggggagacgagcctcacacctccgcggacaatgcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |