BAC Information

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BAC

Clone NameMSMg01-371K01
Chromosome10 (Build37)
Map Location 101,750,013 - 101,750,288
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413, Cart1, Lrriq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371K01.T7 (MSMg01no371_k01.b1)MSMg01-371K01.TJ (MSMg01no371_k01.g1)
ACCAG478087AG478088
length765802
length of high quality
(start - end)
504 (73 - 576)279 (42 - 320)
definitionCHROMAT_FILE: MSMg01no371_k01.b1 PHD_FILE: MSMg01no371_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:09 2005CHROMAT_FILE: MSMg01no371_k01.g1 PHD_FILE: MSMg01no371_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGATCAGTGAGTTGACAGATTTCTAT
TGAACGCAATGGGATATTGTATATCTTTAGTCTTAGACAATGTAGGTAAG
GCTAGATTGTAGAAGGAAGCAGCCATGTTTAAAGTGAGGGGCAGACAAAG
TGATGAATCAGAGAAAAATTTGACAGAATGAATCAGAGAGCAGATACTCC
CAACTCACACAAGAACAATGGAAAAAGAGCTTTCTCTTAGGAAAGAGAAA
AGGAGAGAAGGTAGTTTTACTAGGAGAGTTTTACAGAACATGTGAAAAGA
GAAGGAGCCAGAGAATGAGAAGGAGCTAGAAGATTAAAACACATTGCAAA
GTTAATTTGAGGCCAAGCAGAACAATTCAGACAAGTGCCACCTGAGAGGA
TCCATCTTAAATCAGTCAGCATGAAGAGGAGTTTGAGCCAGAGCACCTGA
GTTGAACCAGCCAACCAGAGTTCAGAAAGAGCAAGAAAGGGTGAGTTTAT
TCAGCAGTAGGCCTCTGAGATGACAATTACATCTGGCAAATAAAAGTTAC
TCTTATATGTAAACATTAGCGTCTAAAATAGTGGTCACAGATGTGAAAAC
AATATTACTGTTAGGAATGAAGAGACCTAATGTTTAGTCTTAATGTTAGC
TTACGAGAAAATATTGCTTTTTTCACAATTGTTCTTCCAATAATGAACCT
GAATGTTCTGGTCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAATTC
TATTAGCTCATGACCGTATACTAATTGTTTATCCAGTTCCAAATGGTCAG
CTATGGAAACACATACTAGCAACATTATGCCGACTGACCATGCCAGTAGA
CGAGTAGACCATCTACCATGGTGAAATTGTTTGTCCAAAAATAGAAATGA
TATGGAATGAAAGGTTTAGAAGGTAGAGAGTGAAACTGTGAAAAATTATG
GAATTGGAGGTAAGAGGGGAGGATATGATGATACTTTATATGAAATTCTC
GAAGGATTAACATATTAATCATTTTATTACATTTAATATTACAATATTTT
AATTAATAAATGTTTGGTCTGCTGGCTCTTATCAGTCTTTGTGGTCCCTC
TATTATGATGCTCCCATAACATTATGTTTGGTGATTGATGAATACCTAAC
TAATATATTATATGGCCAATTCATTTCTATATTTCAACTATTTCAGTTGC
GACATTGATTTACTCGTCCATGCCACTTTCAGCATACGTTCTTTGAACAT
CTCCGGATGCTACACCCATCTGTTGTTTATTTTAACACATCCTACTCTGA
CCTTCCACACCCTATCTCTTGCCCTCTTACTGTTATCCCATCTTGCTTCT
TTCGTCCTCCCTCTTCTTTTATTTTTCCTTACTACCGTTTTCATTTATTT
CTCTTTCCCATTCCCTCAATTATCTCACCTTCCCTTGCCTATTATTCTCT
TCACTCCTTTATTCCCACTTATTTTTCTTTTCCTATCCCCCCTTTATCCA
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_k01.g1 MSMg01no371_k01.g1 CHROMAT_FILE:
MSMg01no371_k01.g1 PHD_FILE: MSMg01no371_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:09 2005
         (279 letters)



>mm_chr10_101749810_101750488
          Length = 679

 Score =  511 bits (264), Expect = e-149
 Identities = 273/276 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctattagctcatgaccgtatactaattgtttatccagttccaaatggtcagctat 63
           |||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctattagctcaagattgtatactaattgtttatccagttccaaatggtcagctat 263

                                                                       
Query: 64  ggaaacacatactagcaacattatgccgactgaccatgccagtagacgagtagaccatct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggaaacacatactagcaacattatgccgactgaccatgccagtagacgagtagaccatct 323

                                                                       
Query: 124 accatggtgaaattgtttgtccaaaaatagaaatgatatggaatgaaaggtttagaaggt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 accatggtgaaattgtttgtccaaaaatagaaatgatatggaatgaaaggtttagaaggt 383

                                                                       
Query: 184 agagagtgaaactgtgaaaaattatggaattggaggtaagaggggaggatatgatgatac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agagagtgaaactgtgaaaaattatggaattggaggtaagaggggaggatatgatgatac 443

                                               
Query: 244 tttatatgaaattctcgaaggattaacatattaatc 279
           ||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttatatgaaattctcgaaggattaacatattaatc 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)