BAC Information

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BAC

Clone NameMSMg01-372G07
Chromosome10 (Build37)
Map Location 88,746,214 - 88,876,643
singlet/doubletdoublet
Overlap geneGas2l3
Upstream gene1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d
Downstream geneNr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039, LOC544719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372G07.T7 (MSMg01no372_g07.b1)MSMg01-372G07.TJ (MSMg01no372_g07.g1)
ACCAG478667AG478668
length744772
length of high quality
(start - end)		244 (72 - 315)412 (72 - 483)
definitionCHROMAT_FILE: MSMg01no372_g07.b1 PHD_FILE: MSMg01no372_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:08 2005CHROMAT_FILE: MSMg01no372_g07.g1 PHD_FILE: MSMg01no372_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,876,400 - 88,876,643)(88,746,214 - 88,746,625)
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGATATTTCTCTAAGTCCAGACTTTTACCAAGTAAATCTCCTGGAAA
AATGGAACCAAAGCATTTGAAACACAATCATCTTTCTTCTAGGGATGAGT
CACGTATAAACTTATCATCCAAGTCCCCAAAGCTACCTAAAGGAGCCATG
CACGGAAGGCCTAACCCTTCTCCTTTCCAGCCACCTGCCAAAGTGACCAA
GCCCAGTTCTAAAACCGGAGCCATAGGTCTAGGGACACAGTCTCAGCCAC
CCACTAGAACGCCGATGTTTTGAGCAGTCTCAGCACAAAGACTTCAGTCT
ACATTGAATTTAAACAGTCCAGCTTCTGTGTGTTCAGGGTCCTCTGCAAA
AGCTACTCAGGGATCGAAAGGTAAGAATACAGTTTCAGTTGCCAAAAAGC
AACCTCAGAGTAAGGCTGTCTGCCGGAATCCGGGACCTGGCTCTTCAAAG
TCTCCTGGCCGTACCCCGCTGTCCATTGTCATTGTTCCCCAATCCTGCTA
CCAAGACAGAAACTGTCTCGAAGTCAGCCAAGATTGTCATGTATGGCCAC
TACTCATCCAAAGGGTCTCCCTAAAGCTTCTTGCCCCCCTCTTCATTCTG
GTATTCCCCCTTCTTTTGCCAAGTGTTTTCTACCTTTTGACACTATAACC
CCCCCTGCCTCGTATTTAATCCCCTATTATTTTTCATTATTCTC

TGCAGCGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGTGACTCTGATGCCAGTCCTCTAAGAG
CTTCTGACACTGACTAAAATAATCATGACAAATGAAATTAGAGCTTTGAG
CTTTCCAATAGCCAAATCAAAAAGTTGTGTTATATAACTGTCATTGTATT
TAGCGAGGAGACAACAATTTTCCAAAGTCTAAAAGTAATGTGAATCACTA
CCTACGCAATAGAGTTGTTCTAAGTTAAATGGATTGGAATCAATCAGGGA
GAACTCTTGAAAAATGTTGAGAACTTTGCTAAGGAAGATATGCCATACTG
TACTCAACATATTTCTGAAATGGTGTTAAGCAAATATCCTTTTACTAACT
AATATTAGTTTTTTCTAACTTCTGAATATCCATAAGAAATAGTTTATGGC
CATACTATGGAATGAGGTGAGACAGGATGAGATTGTAGGCATAGAAATGC
ATCATTCTACAATGAATCTGCATTTAACTACGCCCAATTGAAAAAAAAAA
TCCCCAAGGAGTAAATACCCACCCCAGATAGCCTTGCTCTTCCGGAAACA
ATCTTTTCTACCTGTAAATTTTAACACACGTTCACCCAAGACACCATTTA
TTCCCCTTGTTTATTTTACCATTATGTCATTCCAAACCATTATTCACCTC
ATTTTGTGGCCTCTTCCCCATTACCCCTCCCCCACCCCCCGTAGATTTGT
TTTTTTCCCCCTCCCTACTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_g07.b1 MSMg01no372_g07.b1 CHROMAT_FILE:
MSMg01no372_g07.b1 PHD_FILE: MSMg01no372_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:08 2005
         (244 letters)



>mm_chr10_88876200_88876843
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacttttaccaagtaaatctcctggaaaaatggaaccaaagcatttgaaacacaatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agacttttaccaagtaaatctcctggaaaaatggaaccaaagcatttgaaacacaatcat 385

                                                                       
Query: 61  ctttcttctagggatgagtcacgtataaacttatcatccaagtccccaaagctacctaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttcttctagggatgagtcacgtataaacttatcatccaagtccccaaagctacctaaa 325

                                                                       
Query: 121 ggagccatgcacggaaggcctaacccttctcctttccagccacctgccaaagtgaccaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggagccatgcacggaaggcctaacccttctcctttccagccacctgccaaagtgaccaag 265

                                                                       
Query: 181 cccagttctaaaaccggagccataggtctagggacacagtctcagccacccactagaacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cccagttctaaaaccggagccataggtctagggacacagtctcagccacccactagaacg 205

               
Query: 241 ccga 244
           ||||
Sbjct: 204 ccga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no372_g07.g1 MSMg01no372_g07.g1 CHROMAT_FILE:
MSMg01no372_g07.g1 PHD_FILE: MSMg01no372_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:08 2005
         (412 letters)



>mm_chr10_88746014_88746825
          Length = 812

 Score =  797 bits (412), Expect = 0.0
 Identities = 412/412 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgactctgatgccagtcctctaagagcttctgacactgactaaaataatcatgacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgactctgatgccagtcctctaagagcttctgacactgactaaaataatcatgacaa 260

                                                                       
Query: 61  atgaaattagagctttgagctttccaatagccaaatcaaaaagttgtgttatataactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaaattagagctttgagctttccaatagccaaatcaaaaagttgtgttatataactgt 320

                                                                       
Query: 121 cattgtatttagcgaggagacaacaattttccaaagtctaaaagtaatgtgaatcactac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattgtatttagcgaggagacaacaattttccaaagtctaaaagtaatgtgaatcactac 380

                                                                       
Query: 181 ctacgcaatagagttgttctaagttaaatggattggaatcaatcagggagaactcttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacgcaatagagttgttctaagttaaatggattggaatcaatcagggagaactcttgaa 440

                                                                       
Query: 241 aaatgttgagaactttgctaaggaagatatgccatactgtactcaacatatttctgaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatgttgagaactttgctaaggaagatatgccatactgtactcaacatatttctgaaat 500

                                                                       
Query: 301 ggtgttaagcaaatatccttttactaactaatattagttttttctaacttctgaatatcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtgttaagcaaatatccttttactaactaatattagttttttctaacttctgaatatcc 560

                                                               
Query: 361 ataagaaatagtttatggccatactatggaatgaggtgagacaggatgagat 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataagaaatagtttatggccatactatggaatgaggtgagacaggatgagat 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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