BAC Information

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BAC

Clone NameMSMg01-374D08
Chromosome10 (Build37)
Map Location 30,255,514 - 30,255,714
singlet/doubletsinglet
Overlap geneTrmt11
Upstream geneRspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815
Downstream geneHint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374D08.T7 (MSMg01no374_d08.b1)MSMg01-374D08.TJ (MSMg01no374_d08.g1)
ACCAG480058AG480059
length777753
length of high quality
(start - end)
202 (360 - 561)---
definitionCHROMAT_FILE: MSMg01no374_d08.b1 PHD_FILE: MSMg01no374_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:22 2005CHROMAT_FILE: MSMg01no374_d08.g1 PHD_FILE: MSMg01no374_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGCGACATCACTTCACCTCTGTGGGCCTGTATCAAGAACATGG
GCAGACTACAACTATCTCGCCGTTCCCTGAAATCTTCTGTTATGTGGATA
ATACCCCTGAAGCTTCACGTCAAGAGAGAACGCATACCCCAAGACACGGC
GATGGGTTGAAATGTCACTAAGTTACACAAAACTTCCAACTGCGTCCCCA
TTCCGTCTCTTGAAAAGATCCCCTCTCCTGAGATGCCGATGCCAGGAGAC
TGTCTATGTCCACGACTATAGACTTCACAGCTAAGTAGAGGCTGGAGCTC
GAATTACTCGCTGGGCATTGAAAGAGTTAATCTGGGTTAGAATGCCCCAC
ACATTCTGGGTTAGATGAGAGGACTGACAGAAACCTGAAACATTAGTTTC
ACACTCAATCTCACAATCAATTTCAAGCAGAAACAGAAACCTAAGTTAAA
ATAAAGTTCCTTTTCCTATGTATTTCTTTAAATTCACATTCAACTACACA
CAGACTTTTGGAAATTTACTGTAAATTCATATAGCACTTCCCTGAATGGA
GTCTTGCTTTCTTGCTTTTTTGTTTTTTTTTGAGACAGGGTTCCCTGTAT
AGCCCTGGGTATCCTGGAATTCCCTTTGTAGACCAGGCTTGGCCTCCAAC
TCCTAAATCCCCCTGCCTCCGGCTCCCAGGGGTGGGATTAAAGGGCGCGC
CCCCCCCCCCCCTTTTATTTCTGTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCTATGTCTCAGATGCGATCCCAGGAACGCAGATCTAAACGAT
CTATTGTTGCTTAGAGAGAACATGCACTTAACAGTGCGTAATCGCAAAAC
GGTATATGTCAAAGTTGACCTATACTGGCCAGCCACTGTACTCCTGAGTC
TGCCTACCTGTCTGACTCGCTCGTGTCTATCTGCCTGCCTGACTGCCTGT
CTTGTGTTACTCTTACAACAGGTCCTCACTCTTTAACTCTGGATATACTG
GTGTCCCATGTGTGGAGCACGCTGGCCTCACACTCACCTTCCTCTGTCTC
CTTGTGGCATGATGCCCTGCCCGATTGCTCCCTTTATTTGTAGAATCTTA
TGCGTCACAAAACTATTTCGAATATTATCATACGGGGAAAAGCAGACCTG
AATATCATGACAAAGCCTCAGCTGAGGCCTTGTATGAAGAATATTTATTA
TGCACTCACCAACTTTGGTGATAGCAGTTACTTCCCATTGTTGCCCCTTC
TGCATATACCCTGTACTTTCCCCCAATTAACCAATGATTTCCTGACTCAA
CTGGTTTTTTTTTTCTCAATATATTTTCCTGGGATTCTCTTTCTTCCCTC
ACAAAAATGTCCTTTCTCTTTCTCCTTATTTCTGCCTTCCTGTCCATCCA
CATTCTTCGTTGATCTTCTTCCTTTCAATTTGTTCTTCTTCTTATACCCT
GCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_d08.b1 MSMg01no374_d08.b1 CHROMAT_FILE:
MSMg01no374_d08.b1 PHD_FILE: MSMg01no374_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:22 2005
         (202 letters)



>mm_chr10_30255313_30255914
          Length = 602

 Score =  342 bits (177), Expect = 7e-99
 Identities = 195/201 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctgggcattgaaagagttaatctgggttagaatgccccacacattctgggttagatgaga 61
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctgggcattgaaagagttgatctgggttagaatgccccacacattctgggttagatgaga 261

                                                                       
Query: 62  ggactgacagaaacctgaaacattagtttcacactcaatctcacaatcaatttcaagcag 121
           ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||
Sbjct: 262 ggactgacagaaacctgaaacattagtttcacactcagtctcacaaacaatttcaagtag 321

                                                                       
Query: 122 aaacagaaacctaagttaaaataaagttccttttcctatgtatttctttaaattcacatt 181
           ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 322 aaacagaaacctaagttgaaataaagttccatttcctatgtatttctttaaattcacatt 381

                                
Query: 182 caactacacacagacttttgg 202
           |||||||||||||||||||||
Sbjct: 382 caactacacacagacttttgg 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space:   115236
Effective search space used:   115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)