BAC Information

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BAC

Clone NameMSMg01-375A15
Chromosome10 (Build37)
Map Location 9,986,521 - 9,986,988
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666636, E130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238
Downstream geneLOC665110, 9130014G24Rik, Rab32, EG382450, Grm1, Shprh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375A15.T7 (MSMg01no375_a15.b1)MSMg01-375A15.TJ (MSMg01no375_a15.g1)
ACCAG480690AG480691
length761769
length of high quality
(start - end)		473 (50 - 522)507 (79 - 585)
definitionCHROMAT_FILE: MSMg01no375_a15.b1 PHD_FILE: MSMg01no375_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:29 2005CHROMAT_FILE: MSMg01no375_a15.g1 PHD_FILE: MSMg01no375_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATC
CGCGGAATTCCAGGGAATTCCGACAGAACAGAGTTCTCCAAAACCTAAAC
ACTGCCAATGTTGATGCCCCTAATTTATTCTAACAACAATTTAAGTCTGA
ATGCCTCCATTTTAATCACATTAGCAGTACATTACAGAGCTGTAACACCC
AAAGACCTCCAGAGGCAAAGTGAATCTGGCTGTTCTGCCTCCTTTTCTTT
GGAATGATTTTTGCTGGTAGAAATCTCTAGGCAAACCCAGTCCTCTGGTA
ATTTCCCATTGACTCCTTTTGCTTCGTATATGCTGGGACCTTGGTGTTTG
CCCAAAGATAATGGGGGAAATAAGCATACCTACTCTCTGAGTAGCAGCCT
AGGTGCCAGGCTTCCCACTGCTGCCATTTACCTAAACTTGGGAACTCATT
TCCCATGTACTTGATTGCCATTAAAGGAAAATTGTTTGAACAAACTCACA
TCAAATGTTATCAACCTCAAATGCAGGCCTGATTGGCATCATGCTGTAAG
CACAGGGGGTGAAATCTCCCAGAAACCATGTGCCCCAGTTTACATCTCTT
GATCCTACCTGGGGAAATATATTCATCAATGGGACCCATGTAAAAATTGT
CTCTGTGAGGCCGAAACATTGCCAGCTGGGATAACTCTAAGCCTCCTAAT
TATTTGGGCAGGCTGCCTTACGCTAAGGCCCTTAATTTTTGGTGAAAGGG
ACTATCCTGGG

TTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCTGTTAGTTCTGTTTCAT
TTATTGTGAAGAATACCTTGGCAAAAACAACTTAGGGAAGAAAGTTCAAA
GTTCAAGCCATCAGGGCAGTGAAGTCACAGTGGCAAGAATTCGAATCAGC
TTGTCACAACACATCCATAGTAGAAAAAAAAAGAGAGAGAGAGAGAGAGA
GAATAACTAATGAATACATGCATATTTTCACTCAGCTAATTTTCTCCACT
CTTATATAGTTCAGGATCTCCTGCCTAGGGAATGGTACCTCCCATAGTAG
GTAGGTCTTCCCACCTCAATGAAACTAATCAAGACAATTCCCCACAGAAA
TGCCTACAAGTAACTTGATTTAGGCAATCCATCTTTTCCCAAATGATTAT
AAATTATTTTAATTTGACAGTTAAAACCCACAAAATGATAAGACAAGATT
TCCACTTATCTCTTTTCTTATCTTTATATGGNGACGAATGAAATTTAAAT
ATAATTATATTTTATATCAAAGCTAGATTAGTCTGTAGATATATTTTAAA
GTATAAAAGTGGTTTAATGAGTGGTTTTGTTCTTTTGCCACGGTTTCTAT
TTTAACTAGCAAAATCTTCCCTTTAGGAATAAAAAACTTTTCTTCCCCCA
ATTTGGGAATTGACTTAAGTCTCGGCTTAAAGAAAAAGTACATTTTATAA
GTCCTTTTCCTTTGTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_a15.b1 MSMg01no375_a15.b1 CHROMAT_FILE:
MSMg01no375_a15.b1 PHD_FILE: MSMg01no375_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:29 2005
         (473 letters)



>mm_chr10_9986316_9987188
          Length = 873

 Score =  866 bits (448), Expect = 0.0
 Identities = 463/468 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccagggaattccgacagaacagagttctccaaaacctaaacactgccaatgttga 65
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gaattccagggaaggctgacagaacagagttctccaaaacctaaacactgccaatgttga 614

                                                                       
Query: 66  tgcccctaatttattctaacaacaatttaagtctgaatgcctccattttaatcacattag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgcccctaatttattctaacaacaatttaagtctgaatgcctccattttaatcacattag 554

                                                                       
Query: 126 cagtacattacagagctgtaacacccaaagacctccagaggcaaagtgaatctggctgtt 185
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 553 cagtacattacagagctgtaacacccaaagacctccagaggcaaggtgaatctggctgtt 494

                                                                       
Query: 186 ctgcctccttttctttggaatgatttttgctggtagaaatctctaggcaaacccagtcct 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ctgcctccttttctttggaatgatttttgctggtagaaatctctaggcaaacccagtcct 434

                                                                       
Query: 246 ctggtaatttcccattgactccttttgcttcgtatatgctgggaccttggtgtttgccca 305
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 433 ctggtaatttcccattgactccttttgcttcgtagatgctgggaccttggtgtttgccca 374

                                                                       
Query: 306 aagataatgggggaaataagcatacctactctctgagtagcagcctaggtgccaggcttc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aagataatgggggaaataagcatacctactctctgagtagcagcctaggtgccaggcttc 314

                                                                       
Query: 366 ccactgctgccatttacctaaacttgggaactcatttcccatgtacttgattgccattaa 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ccactgctgccatttacctaaacttgggaactcatttcccatgtacttgattgccattaa 254

                                                           
Query: 426 aggaaaattgtttgaacaaactcacatcaaatgttatcaacctcaaat 473
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aggaaaattgtttgaacaaactcacatcaaatgttatcaacctcaaat 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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