BAC Information

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BAC

Clone NameMSMg01-375D13
Chromosome10 (Build37)
Map Location 103,774,784 - 103,775,247
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375D13.T7 (MSMg01no375_d13.b1)MSMg01-375D13.TJ (MSMg01no375_d13.g1)
ACCAG480828AG480829
length745754
length of high quality
(start - end)		510 (47 - 556)472 (76 - 547)
definitionCHROMAT_FILE: MSMg01no375_d13.b1 PHD_FILE: MSMg01no375_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:45 2005CHROMAT_FILE: MSMg01no375_d13.g1 PHD_FILE: MSMg01no375_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCC
GCGGAATTCCATGAAATTACTTACTTCTGAGAATTAATTAGCTTTTCCCA
GAGATGAGCTCCCTAATTGTTTATCCAATGCAAAATTGTTATCTCTAAAA
GCATACTCATACAGGTAATAGTAAATGAACATAGCATGTTATATTTACTC
ATTTTAAGTTCATGATATACATACTCATTACATATGTATGTAACATTAAA
ATTATTAAACCGTACTTACTAAAGAAAATGAAGCCATAATTTAAGGGGCT
GCATTTGGAGGTGGGGGTTAAACAGTAGTAAAATGCAAGTAAACATTTGT
ATTAAAATACAAATTTAAATATTTTTCAGCAGGATTAATATAATTACAAC
ATTTCTTTTTCCATTTCCTTCTTCCAAACACCTCCATATATTTCTTTCAC
TACTTCAAATTCATGAACACTTTTCATTAATTACTATCACATAGATTTGT
GTGTGTGTGTGTGTGTGTGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTNTNTNTNNNNNNNNNNNNNNNNTTNTTTNTTTTTTTTTTTTTTTTT
TTTTTNNTTTTTTTTTTTTTTNTNTTTNTTTTNTTTTTTTTTTTTTTTTN
TTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTT
TTTTTTTTTTTTTTTTNTTTTNTTTTTTTTTTTTTTTTTTTTTTT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCAT
GAATGGGTGTTGGATTTTGTTGAATGCTTTTTCCGCATCTAAGGAGATGA
TCATATGGTTTTTGTCTTTGAGTTTGTTTATATACTGGATTACGTTTTTG
AAATCGTATATTGAACCATCCCTGGGATGAAACCTACTTGGTCAGGATGG
ATGATTGTTTTGATGTGTTCTTGGATTCGGTTAGCGAGAACTTTATTGAG
GATTTTTGCATTGATATTCATAAGGGAAATTTGTCTGAAGTTCTCTATCC
TTGTTGGATCTTTTTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATAG
AATGAGTTGGGTAGAGTACCTTCTAATTCTATTTTGTGGAATAGTTTGGG
AAGAACCCAGATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGATAGTA
CTAAACCCATCTGGTCCTGGGCTTTTTTTTTTTTTTTTTTTTTTGGTTGG
GTGACTATTAATGACTGCTTCTATTTCTTTAGGGGATATAGGACTGTTTA
AATCATTACCCTGATCTTGATTTAAATTTGGCACCTGGGATCTGTCTAGA
AACTTTTTCTTTTACTCCATCTTCTCCCGGTTTGGGGAGCACAACTTTTT
GGAAAAACCACTGTAGGGTGTGTTGGTTTTTTTTACCGATTGTTTCGCAT
CTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_d13.b1 MSMg01no375_d13.b1 CHROMAT_FILE:
MSMg01no375_d13.b1 PHD_FILE: MSMg01no375_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:45 2005
         (510 letters)



>mm_chr10_103774709_103775618
          Length = 910

 Score =  859 bits (444), Expect = 0.0
 Identities = 459/464 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattccatgaaattacttacttctgagaattaattagcttttcccagagatgagctccc 67
           |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 539 gaattccatgaaattaattacttctgagaattaattagtttttcccagagatgagctccc 480

                                                                       
Query: 68  taattgtttatccaatgcaaaattgttatctctaaaagcatactcatacaggtaatagta 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 taattgtttatccaatgcaaaattgttatctctaaaagcatactcatacaggtaatagta 420

                                                                       
Query: 128 aatgaacatagcatgttatatttactcattttaagttcatgatatacatactcattacat 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aatgaacatagcatgttatatttactcattttaagttcatgatatacatactcattacat 360

                                                                       
Query: 188 atgtatgtaacattaaaattattaaaccgtacttactaaagaaaatgaagccataattta 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atgtatgtaacattaaaattattaaaccgtacttactaaagaaaatgaagccataattta 300

                                                                       
Query: 248 aggggctgcatttggaggtgggggttaaacagtagtaaaatgcaagtaaacatttgtatt 307
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 299 aggggctgcatttggaggtgggggttaaacagtagtaaaatggaagtaaacatttgtatt 240

                                                                       
Query: 308 aaaatacaaatttaaatatttttcagcaggattaatataattacaacatttctttttcca 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 239 aaaatacaaatttaaatatttttcagcaggattaatataattacaacatttctttttccc 180

                                                                       
Query: 368 tttccttcttccaaacacctccatatatttctttcactacttcaaattcatgaacacttt 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tttccttcttccaaacacctccatatatttctttcactacttcaaattcatgaacacttt 120

                                                       
Query: 428 tcattaattactatcacatagatttgtgtgtgtgtgtgtgtgtg 471
           ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 119 tcattaattactatcacatagatttgtgtgtatgtgtgtgtgtg 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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