BAC Information

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BAC

Clone NameMSMg01-375G09
Chromosome10 (Build37)
Map Location 29,367,566 - 29,469,205
singlet/doubletdoublet
Overlap geneRpl12
Upstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389
Downstream geneLOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375G09.T7 (MSMg01no375_g09.b1)MSMg01-375G09.TJ (MSMg01no375_g09.g1)
ACCAG480962AG480963
length793764
length of high quality
(start - end)
427 (72 - 498)322 (81 - 402)
definitionCHROMAT_FILE: MSMg01no375_g09.b1 PHD_FILE: MSMg01no375_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:59 2005CHROMAT_FILE: MSMg01no375_g09.g1 PHD_FILE: MSMg01no375_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,468,779 - 29,469,205)(29,367,566 - 29,367,884)
sequence
NNNGATTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCCAAGGATACGTACAGACTTTTANATTCCTAAAGTATTTGT
TAAATAATAATAACCGTCATCATTTATGAAAACTTTAAGGACAATGGCTG
AAGGATACTATGTTCTCTTTCTATGAGAAAACAACAGGTATAGGTTTAAT
ATTAGTTTTTAATGATATCTTATTACAAAATCATGTGATCCTGTAAAACT
ATTTTCTTCCTTTTTTTCAGTGTTGATGATCAAATCGGTCTGTGTTAAGA
GAGCTGTGGTATTAAGACCTACCTCGCCGCAGCTCAATATTTTCCTGTTT
AGATAAGAAAACAGAAATTCATATCAAATGTAAAGTTCTTGCTACAAGTT
AATTCAGTTAATACTTTCATATTGTGAAGAAATATTCTGTAAACCTTTGG
TAGTGAACATCCATGTTACTGAGACATGCCTGAAGTAGAGCTCTTTTTGC
CTAAGAGTTTTTCAAGCAAACATTTCTCAAGCTGTGTTCTATGGTTCACC
AGCCCCCCAAAAACTTACTGACAGGCTATGGAGAACACGCTGAAGCTCAC
TTATTTTGGGGAAATTTTTTGGTTAAAAATTATTAAATTGGGGGCCCCGG
AAAAAATTTCGCGGGTATAAAGGGACCTATTTGGTAAACCCCAAGGTCTT
GAAGTTTTTACCCTTTCTCACCTTTGAGAAAAATAGGTGGGAGAGACAAA
AACCAATTCCTAAAAATTGTGCCCTTCACCTGCCCTAATCTTT
NTTCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTAAGACAAATAGTGGTC
CCATGCCATTTCTTCCTATCAATTCCAGATGCACATACAGATTTACCAGA
GTTCCCAGTAGTTGCTGTATTGCTCTTGTCTCTAGTGACTTTACCAGAAG
ATCTATTGTTCTCTTAAAACAATACTCTGTTGCCCAATCTCCCCCTGCCC
AGCTGGCATTTGCAGGTGCACTGGTGTTTGTGGCAGCTTGTAGTCTTGGC
AGGGAGTTGCCACAGCCTCCTTTAACAGCAATGACATTTGAATTCTTTAA
TGGGAATTTAAAACTTACTTAGATTATTTTGTGTGTGTGTGTGGGGGGGG
CNNNCCNCCCCCCCCCCCCCCCCCCCCCCCCCNCCNCCCCCTCTCCCCCC
CCCCCCCCTCCCCTTTTCTCTTCTTCTCCTCCTCTCCCCTTTTTTTTTCC
CCCCCCTTTTTCCTTTTTTCTCCCTCTCCCTTCTTTTTCCTCTTTCTCTT
CCTTTCCTCTCTCTTTTTTCTTTCTCTTTCTTCTCTTCTTTTCTTTTTCT
CCTCTTTTTTTCCTTCCCCTTCTTTTCCTTCCTTTTTCTCCTCTTTTCCC
TCTTTTCCTCTTCCTTTTCTTCCTTCCTCTCTTCTTTCTTTTTTTCCCTC
TTCTTTTTTTTTTTCCTTTCTTTTTTTTTTGCTTTTTCTTTTTTTTCTCC
TTATTCTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_g09.b1 MSMg01no375_g09.b1 CHROMAT_FILE:
MSMg01no375_g09.b1 PHD_FILE: MSMg01no375_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:59 2005
         (427 letters)



>mm_chr10_29468579_29469405
          Length = 827

 Score =  743 bits (384), Expect = 0.0
 Identities = 416/427 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagacttttanattcctaaagtatttgttaaataataataaccgtcatcatttatgaaa 60
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 acagatttttaaattcctaaagtatttgttaaataataataaccgtcatcatttatgaaa 568

                                                                       
Query: 61  actttaaggacaatggctgaaggatactatgttctctttctatgagaaaacaacaggtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 567 actttaaggacaatggctgaaggatactatgttctctttctatgagaaaacgacaggtat 508

                                                                       
Query: 121 aggtttaatattagtttttaatgatatcttattacaaaatcatgtgatcctgtaaaacta 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aggtttaatattagtctttaatgatatcttattacaaaatcatgtgatcctgtaaaacta 448

                                                                       
Query: 181 ttttcttcctttttttcagtgttgatgatcaaatcggtctgtgttaagagagctgtggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttttcttcctttttttcagtgttgatgatcaaatcggtctgtgttaagagagctgtggta 388

                                                                       
Query: 241 ttaagacctacctcgccgcagctcaatattttcctgtttagataagaaaacagaaattca 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttgagacctacctcgccgcagctcaatattttcctgtttagataagaaaacagaaattca 328

                                                                       
Query: 301 tatcaaatgtaaagttcttgctacaagttaattcagttaatactttcatattgtgaagaa 360
           |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 327 tatcaaatgtaaagttcttgctacaaattaattcagttaatacttttatattgtgaagaa 268

                                                                       
Query: 361 atattctgtaaacctttggtagtgaacatccatgttactgagacatgcctgaagtagagc 420
           |||| |||||| ||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 267 atatcctgtaagcctttggtagtgagcatccatgctactgagacatgcctgaagtagagc 208

                  
Query: 421 tcttttt 427
           |||||||
Sbjct: 207 tcttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no375_g09.g1 MSMg01no375_g09.g1 CHROMAT_FILE:
MSMg01no375_g09.g1 PHD_FILE: MSMg01no375_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:59 2005
         (322 letters)



>mm_chr10_29367366_29368087
          Length = 722

 Score =  611 bits (316), Expect = e-179
 Identities = 319/320 (99%), Gaps = 1/320 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctaagacaaatagtggtcccatgccatttcttcctatcaattccagatgcacatacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctaagacaaatagtggtcccatgccatttcttcctatcaattccagatgcacatacag 260

                                                                       
Query: 61  atttaccagagttcccagtagttgctgtattgctcttgtctctagtgactttaccagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttaccagagttcccagtagttgctgtattgctcttgtctctagtgactttaccagaag 320

                                                                       
Query: 121 atctattgttctcttaaaacaatactctgttgcccaatctccccctgcccagctggcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctattgttctcttaaaacaatactctgttgcccaatctccccctgcccagctggcatt 380

                                                                       
Query: 181 tgcaggtgcactggtgtttgtggcagcttgtagtcttggcagggagttgccacagcctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcaggtgcactggtgtttgtggcagcttgtagtcttggcagggagttgccacagcctcc 440

                                                                       
Query: 241 tttaacagcaatgacatttgaattctttaatgggaatttaaaacttacttagattatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaacagcaatgacatttgaattctttaatgggaatttaaaacttacttagattatttt 500

                               
Query: 301 gtgtgtgtgtgtgggggggg 320
           ||||||||||| ||||||||
Sbjct: 501 gtgtgtgtgtg-gggggggg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)