BAC Information

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BAC

Clone NameMSMg01-377K08
Chromosome10 (Build37)
Map Location 57,219,454 - 57,219,876
singlet/doubletsinglet
Overlap geneHsf2
Upstream geneLOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
Downstream geneSerinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377K08.T7 (MSMg01no377_k08.b1)MSMg01-377K08.TJ (MSMg01no377_k08.g1)
ACCAG482678AG482679
length761821
length of high quality
(start - end)
422 (75 - 496)244 (80 - 323)
definitionCHROMAT_FILE: MSMg01no377_k08.b1 PHD_FILE: MSMg01no377_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:54 2005CHROMAT_FILE: MSMg01no377_k08.g1 PHD_FILE: MSMg01no377_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATC
CGCGGAATTCAATAATTTTCAACCTTAATGTTACTTTACTTCATAACACA
GGTTACCGTTTTGATCATAGGCCACATGCGACAACTGCTCTTCATGTCTG
CCTAAGGCTGGCTCACTACACTCAAACCCTGTCAGTCATCAGCTTATTTT
TAGCTCAAGTGACTTTTCAGCAAGAACAAGACTCATCACTCCCCCACCCC
CACCCCTCCAAAGAACCTGTTGCTATGAGCCTAGTTTACTCATAAGCAAA
AAATAGATCCCTCTATTGCTCTCCTGTTTCTTTACTGACAAATGGAAGTT
GGAACATAAAGATGAAATGACAAGGACACAATGCCAGGGGCAGGTTCTAG
GGTCTCCTTTGATACAGCCTCCTTTGATGCTGAATTTATTTACTACTTTA
CTGTAACTACGTATAGACTATGCCTGTTATATCATACACTGAGAAAAGCA
CCACTGAACTCCTAGGTGGGCCACATGACTTATAAATTAACCTTACCTAT
CATAGCAAAAATCTACCGGAAAAAGTCTACAGAACAGTTCAATGCCAACC
CAGAATACTTACAAGCATATGTCTATCACCTCGCCAGGCTGGAAATCTTC
TTACTTTCCTAACAATTCGTTCGTTGTTCGCCCCTTTTTTTTTCTCCTTT
TTTACACCCCCCTTTTCCAGCACTTTATTTTTCCTCCGCTTTTACCTTCA
CTCCCACCCCG
TTCCCAATGATATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTGCCCTG
TTTTTTAATGGGGTTATTTGGTTTTCTGGAATCCATCTTCTTGAGTTGTT
TATATATATTGGATATTAGTCCCCTAACTGATATAGAATTGGTAAAGATG
CTTTCCCAATCTGTTGGTGGCCTTTTTGTCATATTGACAGTATCTTTTGC
CTTATAGAAACTTTGCAATTTTATAAGGCCCCATTGTCAATTATTATTCT
TACAGCACAAGTCATTGCTGTTCTATTCAGGAAATTTTCCCCTGTGCCCA
TATCTTTGAGGGTTTCCCACCTTTTTCTCCCCTATAAGTTACACTGCCTC
TGGCTTATGATTTATTTCCCCACCCTTCTTACATCATTCCCTTTCTTTTT
GCTAAAAACTATGCCCTAAATTTTTTGTTTTTCTTTCTACCCTTTTTTTT
TTCTACCCCCCCCCCTTTTTTATATTTTTTTTTTTCTTCTCCCCCTTCAT
TTTTTTCTCTCCCCCCTTCCTTTTTTTTTTCTTATTTATTACTCCCCACC
CCCTTCCACACTTCTTTTTTAATTATCTCCTTTCTTTACTCCTTTTTCTT
CTTTTTTCTATTCTCCCCCTCTCCTTCCATTTTCCACGCCTCCCTTTTTC
CTTTTTCCCCCCCATAATTTTTACCCTTTCTTTCTACCCATTTTTTTTTC
TCCCCTCTTTCTTCTCACCATTCTTTTCCCTTTCACTTTTTTAACGTCTC
TTACTCTTCGCCCATTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_k08.b1 MSMg01no377_k08.b1 CHROMAT_FILE:
MSMg01no377_k08.b1 PHD_FILE: MSMg01no377_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:54 2005
         (422 letters)



>mm_chr10_57219254_57220076
          Length = 823

 Score =  739 bits (382), Expect = 0.0
 Identities = 413/426 (96%), Gaps = 7/426 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatgttactttacttcataacacaggttaccgttttgatcataggccacatgcgacaa 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttaatgttactttacatcataacacaggttaccgttttgatcataggccacatgcgacaa 564

                                                                       
Query: 61  ctgctcttcatgtctgcctaaggctggctcactacactcaaaccctgtcagtcatcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctgctcttcatgtctgcctaaggctggctcactacactcaaaccctgtcagtcatcagct 504

                                                                       
Query: 121 tatttttagctcaagtgacttttcagcaagaacaagactcatcactcccccacccccacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tatttttagctcaagtgacttttcagcaagaacaagactcatcactcccccacccccacc 444

                                                                       
Query: 181 cctccaaagaacctgttgctatgagcctagtttactcataagcaaaaaatagatccctct 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 443 cctccaaagaacctgttgctatgagcctcgtttactcataagcaaaaaatagatccctct 384

                                                                       
Query: 241 attgctctcctgtttct----ttactgacaaatggaagttggaacataaagatgaaatga 296
           |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||
Sbjct: 383 attgctctcctgtttctttacttactgacaaatggaagttggaacataaagatgaaatga 324

                                                                       
Query: 297 caaggacacaatgccaggggcaggttctagggtctcctttgatacagcctcctttgatgc 356
           |||||||||||||||||||||||||||||||| |||||||||||||| |||  |  ||||
Sbjct: 323 caaggacacaatgccaggggcaggttctagggcctcctttgatacag-ctcagt--atgc 267

                                                                       
Query: 357 tgaatttatttactactttactgtaactacgtatagactatgcctgttatatcatacact 416
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 266 tgaatttatttactactttactgtaactacgtatagactatgcctgttacatcatacact 207

                 
Query: 417 gagaaa 422
           ||||||
Sbjct: 206 gagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 823
Length adjustment: 9
Effective length of query: 413
Effective length of database: 814
Effective search space:   336182
Effective search space used:   336182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)