BAC Information

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BAC

Clone NameMSMg01-377L08
Chromosome10 (Build37)
Map Location 117,088,781 - 117,089,156
singlet/doubletsinglet
Overlap geneCpm
Upstream geneEG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c
Downstream geneMdm2, Slc35e3, Nup107, Rap1b, Mdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377L08.T7 (MSMg01no377_l08.b1)MSMg01-377L08.TJ (MSMg01no377_l08.g1)
ACCAG482726AG482727
length791766
length of high quality
(start - end)
303 (39 - 341)376 (79 - 454)
definitionCHROMAT_FILE: MSMg01no377_l08.b1 PHD_FILE: MSMg01no377_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:59 2005CHROMAT_FILE: MSMg01no377_l08.g1 PHD_FILE: MSMg01no377_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCACTTCCTCCCTGTTATAATACAAAATTATTTCTGGTTAAT
CGCGTCTCACTCTGAAGCCCAAGTTCTCTAAAGAAGTTGCTTTTTTTTTT
TTTTTTTTTTGGNACAGAGCCGATGGGAAGTTTGACCTCAGCTGAGCAAA
ACAGCCAGACGGTCCAGAGATACAATGTTGCAGATCAAGAGTCAAACAAT
CTCGGGTTATCTCACTCCTTTTAACAGCCATTTTCTTTCGACCTTTGTGT
CTGACCCAACATCCTGTGAGTGCGGTGTGGGGGTTGGGGGTGTTTTCCTT
TCCTTCCCTTCCTTTTTTTTTTTTGTTCCTTTTTTCCTGTTTTCCCTTTC
CTTTTTCCACCATTTCTTACCTCCTCTCCTTTTTTACTCTTCTTCACTTC
ATTTCCCGTCCCCCTTTCACTTTTTATTTTTTTTTTCCCTATTTCATCCT
CCCATTTCTTCTTCTTCCTCTTTTTTACTCCTTTTTTTCATTTTTTTTCC
CCCTCCCTTTTCCATTCCTTCCTTTCCTCTTCTCTTCCTTTCCTATCCTT
CCCGACCCGTCTACCTTTACTTTGTGCCTCTAGCATCCCATCCCTCCCCT
TTCTTACCCGTTTTTTCCTCTTATACCCCCTTTTTTCCATTTTTTTCCGT
TTTTTCCCCTACCTTCTTTTATCCCCTTTTCTTTACCTTTAATTCCCCTT
TTTTCTCATTCTTATCCTCCCTTTTCTATATTCTCCTTTAT
TTTCCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCTTGGGGGATCACAAGAA
CTGAGAGACTACCGTGGAAGCTGAGACCAGAAGAAACTGGGGGATCTCCC
TCCCCATGGCAGTGATGTCGTGGTCCTTCTAGTTTGACTGGTGTTCCTCT
CTGTTCTCTCTCTCCCTCCCCCATCTCTCTCATTACTATAGTGAGGGACA
GAGACTTGCACGCCATAGTGCATGAACATGCAGAGGTTATGGGCAACCGT
GTGGGGGTGGTCTCCCTCCACCTTTCATGAGACCTAGAGGTGGAGCTCTG
GTTTCTAGGCTCGCAGGGCAAGTCCCTTTACCTGCTGAGCCATCTCACCA
GCTGCCCACTGGCGTTCTTATTTCAGACTGGTGTCTATAGGTGCAAACTG
TTCTAATTTATGACTAGGTTCTTTTCCTGCCACTAATCCTCCCCTGAATA
AGAGTGTTTCCTGTGGTTCTGCTCCCTCCTGTTGTTATTTTTTTTTTTTT
TCACCAATTTTCCCCTGTTTACATTTCTGGTCTTTGTTTTGTAAACAGAT
CTCTTATAATTTTTTGGTTTCCCCCTCTCCACTTTTCCTCCCCTTTTGCC
TTTTTCCCTCCCCTCCCGTAATTTCTGCTTCTTTTTTCGTTAATTGTGTT
CCTTTCTTCACCTCCCACCCACCCATCTTTTTTTCCTCTTTTATGCTTTT
ACCTTCTCTTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_l08.g1 MSMg01no377_l08.g1 CHROMAT_FILE:
MSMg01no377_l08.g1 PHD_FILE: MSMg01no377_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:59 2005
         (376 letters)



>mm_chr10_117088778_117089553
          Length = 776

 Score =  673 bits (348), Expect = 0.0
 Identities = 369/376 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctcttgggggatcacaagaactgagagactaccgtggaagctgagaccagaagaaact 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttctcttgggggatcgcaagaactgagagactaccgtggaagctgagaccagaagaaact 320

                                                                       
Query: 61  gggggatctccctccccatggcagtgatgtcgtggtccttctagtttgactggtgttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gggggatctccctccccatggcagtgatgtcgtggtccttctagtttgactggtgttcct 260

                                                                       
Query: 121 ctctgttctctctctccctcccccatctctctcattactatagtgagggacagagacttg 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctctgttctctctccccctcccccatctctctcattactatagtgagggacagagacttg 200

                                                                       
Query: 181 cacgccatagtgcatgaacatgcagaggttatgggcaaccgtgtgggggtggtctccctc 240
           ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 199 cacgccacagtgcatgaacatgcagaggatatgggcaaccgtgtgggggtggtctccctc 140

                                                                       
Query: 241 cacctttcatgagacctagaggtggagctctggtttctaggctcgcagggcaagtccctt 300
           ||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 139 cacctttcatgggacccagaggtggagctctggtttctaggctcacagggcaagtccctt 80

                                                                       
Query: 301 tacctgctgagccatctcaccagctgcccactggcgttcttatttcagactggtgtctat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  tacctgctgagccatctcaccagctgcccactggcgttcttatttcagactggtgtctat 20

                           
Query: 361 aggtgcaaactgttct 376
           ||||||||||||||||
Sbjct: 19  aggtgcaaactgttct 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)