BAC Information

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BAC

Clone NameMSMg01-378E04
Chromosome10 (Build37)
Map Location 63,946,005 - 64,123,469
singlet/doubletdoublet
Overlap geneCtnna3
Upstream geneLrrtm3
Downstream geneLOC665206, LOC216036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378E04.T7 (MSMg01no378_e04.b1)MSMg01-378E04.TJ (MSMg01no378_e04.g1)
ACCAG483149AG483150
length750754
length of high quality
(start - end)		560 (47 - 606)545 (78 - 622)
definitionCHROMAT_FILE: MSMg01no378_e04.b1 PHD_FILE: MSMg01no378_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:42 2005CHROMAT_FILE: MSMg01no378_e04.g1 PHD_FILE: MSMg01no378_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,946,005 - 63,946,560)(64,122,925 - 64,123,469)
sequence
CGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGCCTTCTGCCTGTAATATTCTATTGAAAGAATGTTAGCAAGGT
GTAGGCGTTAGCTTACTGAGTGGGAAGGGCACTTTTTAATGCAGTCATTA
TGGCTAGTGAATCTGAACATCTAAAAGCACCTCTGCTTGTTTGTTTCAAC
AATCTATCCTCCAGCTCATTATGTGCCAGTGCATGGCCATGAGATCTTGA
TCCCTTTGCCTCCACCTCGTGAGTCACCATGTATGTAAGCTGGCAATAGA
AACCACGCCTTTGTTTATGCTAAGTGTTCTTGTGGAATCTCTGGTGCTGT
GATAAAAATGCCACGATGCAAAGCACCTGAGCAGAAGAAGGGGTTTGTTT
TGCTTACAATTCCAGGTCACAGTTCATCATAGCAGAGTACTCATGTTGGC
TGGAAGCAAGCAGTCACACTCGATCCACAGCCAAGAGCAGAGAAAGAGAA
ATGCATAGTGGTCTGCTTTCTGTTCCGCTAGCTTCCTTTACTGCTGAGAA
CTCCAAAGATTGGTCCTGCTCTCAGTAGGCTTGGCTTCCTATATCAATGA
ACTAAATTGTGGCACCCTCCCATAGGATATTCACAAGCCATTCCAATGTA
AACTTTGAGTTCCTCACTGAAAATCCGGGTGACTCTTGCCTGTCTCAGGT
TGACCCATATAGTATTGATCACATTGGGCAGGTTGGCTGTCAACGCCACT


NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAGTTGTATGTTAGCCTGAAT
TTCCTGCCTGCCCTAGATTCCATATCAGATCAATGGAACTCCCACTGGTG
AAGGACGTTAAGCTTCAGAGGTTTAAAATGATACAAAGAAGAGTTTGGAC
TATAATTTCTCTTAATGTTGTAAAATGTCAGAAGGATTAAAAAGTCAGAG
ATTCCCCAAGTTGGTGACGTCAACAGGTCATTCTTAATTTGTGAGGTAAC
TGATAGTGATTAGGAGTAGGATTCTGATGTGACTATCAATGGGAAACTGA
GTCACAGTCTCCAGGATCTGGGATAAAGTTTGTTTTTAGTGCCATTCATT
ATTATGGGAGGGGAATCAACAATCCTGGTAAAAAGGACAATTTCAAACAG
ACTTTTGTGAGCATGACATTTTCTAGGAAGTTAGACTTCCCTCAATTAAC
AATGATGTTAAGAGATTGATTGTTTTAAACCAGATTTTTGGGATTACTGG
GTATAATCCAATAATACTCATCATTTTATCCTTCTGAGCACTCCCTATCA
TTAAGATATAGGTTTCAATTTAATGTGCTCAAGCTTATTTCCTTGCAGCC
CACTTGAAATGCAATTTAACCCTTCTAGCCTAATTAACTTGTCTGAAAAG
TGTTTTCCGGGTGGTTTTCCACTGATTTTTCANGAGAGTATTTACCCCTG
TTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_e04.b1 MSMg01no378_e04.b1 CHROMAT_FILE:
MSMg01no378_e04.b1 PHD_FILE: MSMg01no378_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:42 2005
         (560 letters)



>mm_chr10_63945801_63946760
          Length = 960

 Score = 1013 bits (524), Expect = 0.0
 Identities = 548/556 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagccttctgcctgtaatattctattgaaagaatgttagcaaggtgtaggcgtta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagccttctgcctgtaatattctattgaaagaatgttagcaaggtgtaggcgtta 264

                                                                       
Query: 65  gcttactgagtgggaagggcactttttaatgcagtcattatggctagtgaatctgaacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 gcttactgagtgggaagggcactttttaatgcagtcattatggctagtgtatctgaacat 324

                                                                       
Query: 125 ctaaaagcacctctgcttgtttgtttcaacaatctatcctccagctcattatgtgccagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 ctaaaagcacctctgcttgtttgtttcaacaatctatcctccagctcattatgtggcagt 384

                                                                       
Query: 185 gcatggccatgagatcttgatccctttgcctccacctcgtgagtcaccatgtatgtaagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 gcatggccatgagatcttgatccctttgcctccacctcgtgagtcaccatgtatgtaggc 444

                                                                       
Query: 245 tggcaatagaaaccacgcctttgtttatgctaagtgttcttgtggaatctctggtgctgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggcaatagaaaccacgcctttgtttatgctaagtgttcttgtggaatctctggtgctgt 504

                                                                       
Query: 305 gataaaaatgccacgatgcaaagcacctgagcagaagaaggggtttgttttgcttacaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 505 gataaaaatgccacgatgcaaagcacctgagcagaagaaggggtttgttctgcttacaat 564

                                                                       
Query: 365 tccaggtcacagttcatcatagcagagtactcatgttggctggaagcaagcagtcacact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccaggtcacagttcatcatagcagagtactcatgttggctggaagcaagcagtcacact 624

                                                                       
Query: 425 cgatccacagccaagagcagagaaagagaaatgcatagtggtctgctttctgttccgcta 484
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 625 cgatccacagccaagagcagagagagagaaatgcatagtggtctgctttctgttccgcta 684

                                                                       
Query: 485 gcttcctttactgctgagaactccaaagattggtcctgctctcagtaggcttggcttcct 544
           |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 685 gcttcctttactgctgagaattccaaagactggtcctgctctcagtaggcttggcttcct 744

                           
Query: 545 atatcaatgaactaaa 560
           ||| ||||||||||||
Sbjct: 745 atagcaatgaactaaa 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no378_e04.g1 MSMg01no378_e04.g1 CHROMAT_FILE:
MSMg01no378_e04.g1 PHD_FILE: MSMg01no378_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:42 2005
         (545 letters)



>mm_chr10_64122725_64123669
          Length = 945

 Score =  969 bits (501), Expect = 0.0
 Identities = 534/545 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttagttgtatgttagcctgaatttcctgcctgccctagattccatatcagatcaatgga 60
           ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 745 cttagttgtatattagcctgaatttcctgcctgccctagaatccatatcagatcaataga 686

                                                                       
Query: 61  actcccactggtgaaggacgttaagcttcagaggtttaaaatgatacaaagaagagtttg 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 685 actcccactggtgaaggacgttacgcttcagaggtttaaaatgatacaaagaagagtttg 626

                                                                       
Query: 121 gactataatttctcttaatgttgtaaaatgtcagaaggattaaaaagtcagagattcccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gactataatttctcttaatgttgtaaaatgtcagaaggattaaaaagtcagagattcccc 566

                                                                       
Query: 181 aagttggtgacgtcaacaggtcattcttaatttgtgaggtaactgatagtgattaggagt 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 565 aagttggtgacgtcaacaggtcattcttaatttgtgaggtaattgatagtgattaggagt 506

                                                                       
Query: 241 aggattctgatgtgactatcaatgggaaactgagtcacagtctccaggatctgggataaa 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggattttgatgtgactatcaatgggaaactgagtcacagtctccaggatctgggataaa 446

                                                                       
Query: 301 gtttgtttttagtgccattcattattatgggaggggaatcaacaatcctggtaaaaagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 445 gtttgtttttagtgccattcattattatgggaggggaatcaacaatcctcgtaaaaatga 386

                                                                       
Query: 361 caatttcaaacagacttttgtgagcatgacattttctaggaagttagacttccctcaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caatttcaaacagacttttgtgagcatgacattttctaggaagttagacttccctcaatt 326

                                                                       
Query: 421 aacaatgatgttaagagattgattgttttaaaccagatttttgggattactgggtataat 480
           ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 aacaatgatgttaagcgattgattgttttaaaccagatttttgggattaccgggtataat 266

                                                                       
Query: 481 ccaataatactcatcattttatccttctgagcactccctatcattaagatataggtttca 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 ccaataatactcatcattttatccttctgagcactccctatcattaagatataggtttta 206

                
Query: 541 attta 545
           |||||
Sbjct: 205 attta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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