BAC Information

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BAC

Clone NameMSMg01-381G13
Chromosome10 (Build37)
Map Location 58,833,815 - 58,834,371
singlet/doubletsinglet
Overlap geneP4ha1
Upstream geneLims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099, Sh3md4, Sept10, Ankrd57, LOC664892
Downstream geneLOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225, Cbara1, EG664907, LOC664936, Dnajb12, Ddit4, D10Ertd641e, Ascc1, Spock2, Chst3, LOC100039080, Psap, Cdh23, 4632428N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381G13.T7 (MSMg01no381_g13.b1)MSMg01-381G13.TJ (MSMg01no381_g13.g1)
ACCAG485556AG485557
length724760
length of high quality
(start - end)
253 (318 - 570)543 (69 - 611)
definitionCHROMAT_FILE: MSMg01no381_g13.b1 PHD_FILE: MSMg01no381_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:48 2005CHROMAT_FILE: MSMg01no381_g13.g1 PHD_FILE: MSMg01no381_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCAAACACAATCCGCGGAATTCACCA
ATTACGACAGACATGTGGCTTCTGTCTGGCTCTAAACCTAAGAAGACTGT
CTGGCTGGATTCAAGGTCTGCTTAATTAGAGAAAACGCATGCTGTAAACC
TAGACAAGAACCCAAAAGAGACATGTAACACAATTCAAGGTCCAGATACA
CCACAAAGGAGGGTGTGGAAAGACCTGGGTCAGAGGAGCAGAACTGCTGT
GAAACAGCATCCTCTGGACACCATGGAGGTTGCACCTCACAGGAGGGTGG
TTCTGATGTNNCTGNCTGCAATCTGTGTTTACTGACACTCAAGGTCCTTG
CCCTCAATTGGTTTTTGATCTATCAACAAAGTTGCCAGTAGCTAATGGCT
GAGTCAAGGGTGGGGACACTGAGAGTTGCACGGGTAGAATGCAGAGAGAA
TGTGGGACTGGGAGAGAGGAGAAGGGGACACAGAAGCCAGGAAGAGATAA
AGCCAACCAGCAATGTCAGTTTCTGGATAAGTGGCCCCTGACCACTTCCC
TGACTGGGCATGGAGTAGCAGGCGAAGATTTACGAATGCCCAGTCAGTGA
GTTAAACAAGGCAGTCCAACAAACACTGTTGTTCGCGCGCTTTCATTCCC
GGACCCAAGTAGCTCCCGGGCCGGAGCATGCTTGTGACCACCCCGAATAA
TCTGTTGGGCAAACCAAACTCCCC
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACCCGTGGTGAGGAGGGGGATTTGATAAAAAG
AGTTTCTTTAAATAATAGGAACTCTGCACGTGGAATAGCAGACCTGACTG
GGCCCTAGTTAGTTACCAGTGCTCAGCAGTCCACACAGCGGAAGAGCAGC
ACACGGGCGTCTGCATGCCTGCTGTCTGTAAGCCCACAGGCTCTGCTCGC
CTGCCACACAGCCTCGCCTGCTTCACCAGCTCCTGACTTGTGGTGAAATC
TACTCCTGGATGCTTTTTTTTATTAAAATTAACCAAAAAGCTCTTTTAAA
CAACAAAATTAGGTTCCTCATTTTCAATGCCTTGTATCCTGTGATAACTG
AACCATAAGTTTTACATCACGTGGTGATTGAGTATTAATTAAAGAAATCC
ACAAAATAAGTGATTGTCCACAGGTGAGACATGGGGCTGAGGCTCATGGC
CCAATTAATCATGGAGTGTTAGTCAGCTGTAAACGTCGGAGTTATAATCA
GCCATCGTGCCTGGTGCGTTAGAGGACAACAGGAGCCAAGGGAAGCCTGG
TTGTCATTCCAATTCTGACAGGGTGCACGGCCTTCGAAATTCTTGTCCAC
GTTCATGGAGCCATTTGTTGCAAACCGCGAGAAGGAAAAAAAAGGTTCTG
ATCCAAAGCTTGCCTTGGTTGTTTCAACCCCATGAAAGGTTTTTATTTGA
TACCCCACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_g13.g1 MSMg01no381_g13.g1 CHROMAT_FILE:
MSMg01no381_g13.g1 PHD_FILE: MSMg01no381_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:48 2005
         (543 letters)



>mm_chr10_58833441_58834382
          Length = 942

 Score =  940 bits (486), Expect = 0.0
 Identities = 533/558 (95%), Gaps = 16/558 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccgtggtgaggagggggatttgataaaaagagtttctttaaataataggaactctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 acccgtggtgaggagggggatttgataaaaagagtttctttaaataataggaactctgca 872

                                                                       
Query: 61  cgtggaatagcagacctgactgggccctagttagttaccagtgctcagcagtccacacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 871 cgtggaatagcagacctgactgggccctagttagttaccagtgctcagcagtccacacat 812

                                                                       
Query: 121 cggaagagcagcacacgggcgtctgcatgcctgctgtctgtaagcccacaggctctgct- 179
           |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 811 cggaagagcagcacactggcgtctgcatgcctgccgtctgtaagcccacaggctctgctc 752

                                                                       
Query: 180 --------------cgcctgccacacagcctcgcctgcttcaccagctcctgacttgtgg 225
                         ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 751 gcctgccacctgcacgcctgccacacagcctcgcctgctccaccagctcctgacttgtgg 692

                                                                       
Query: 226 tgaaatctactcctggatgcttttttttattaaaattaaccaaaaagctcttttaaacaa 285
           ||||||||||| |||||||| ||||||||  |||||||||||||||||||||||||||||
Sbjct: 691 tgaaatctacttctggatgc-tttttttaaaaaaattaaccaaaaagctcttttaaacaa 633

                                                                       
Query: 286 caaaattaggttcctcattttcaatgccttgtatcctgtgataactgaaccataagtttt 345
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 632 caaaattaggttcctcattttcaatgccttgtatcctgtgaaaactgaaccataagtttt 573

                                                                       
Query: 346 acatcacgtggtgattgagtattaattaaagaaatccacaaaataagtgattgtccacag 405
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 acatcatgtggtgattgagtattaattaaagaaatccacaaaataagtgattgtccacag 513

                                                                       
Query: 406 gtgagacatggggctgaggctcatggcccaattaatcatggagtgttagtcagctgtaaa 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gtgagacatggggctgaggctcatggcccaattaatcatggagtgttagtcagctgtaaa 453

                                                                       
Query: 466 cgtcggagttataatcagccatcgtgcctggtgcgttagaggacaacaggagccaaggga 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgtcggagttataatcagccatcgtgcctggtgcgttagaggacaacaggagccaaggga 393

                             
Query: 526 agcctggttgtcattcca 543
           ||||||||||||||||||
Sbjct: 392 agcctggttgtcattcca 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 942
Length adjustment: 10
Effective length of query: 533
Effective length of database: 932
Effective search space:   496756
Effective search space used:   496756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)