Query= MSMg01no381_n13.b1 MSMg01no381_n13.b1 CHROMAT_FILE:
MSMg01no381_n13.b1 PHD_FILE: MSMg01no381_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:23 2005
(382 letters)
>mm_chr10_13828951_13829732
Length = 782
Score = 601 bits (311), Expect = e-176
Identities = 370/405 (91%), Gaps = 26/405 (6%)
Strand = Plus / Plus
Query: 1 catctactctttcacatttatatatctatttactagtgaaaaatatgcaccaattttcta 60
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 201 catctactctttcacatttatatatttatctactagtgaaaaatatgcaccaattttcta 260
Query: 61 ctatacttatcattgtaatatgctctgtggtgtgttcaaatgcgctctctctctctctct 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ctatacttatcattgtaatatgctctgtggtgtgttcaaatgctctctctctctctctct 320
Query: 121 ctctctctctctctctctctctct------------------------gtgtgtgtgtgt 156
|||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgt 380
Query: 157 gtaaaatgcttgtgcatgagtgtgccctgcgaagtctagagcaagactttaagtgtcttc 216
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 gtaaaatgcttatgcatgagtgtgcccttcgaagtctagagcaagactttaagtgtcttc 440
Query: 217 ccatgtcattttctgccttattttgtttagattattatctctcactgaaccagaagcttc 276
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 441 ccatgtcattttctgccttattttgtttagacaag-atctctcactgaaccagaagcttc 499
Query: 277 atatttaggctagactggatttccagaaaattctccagatctgccctctctgcctcccaa 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 500 atatttaggctagactggatttccagaaaattctccagatctgccctctctgcctcctaa 559
Query: 337 tgctggggtt-acagacatctgcagccaagcctggctttttactt 380
|||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 560 tgctggggtttacagacatctgcagccaagcctggctttttactt 604
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space: 288329
Effective search space used: 288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_n13.g1 MSMg01no381_n13.g1 CHROMAT_FILE:
MSMg01no381_n13.g1 PHD_FILE: MSMg01no381_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:23 2005
(487 letters)
>mm_chr10_13984769_13985655
Length = 887
Score = 853 bits (441), Expect = 0.0
Identities = 474/489 (96%), Gaps = 8/489 (1%)
Strand = Plus / Minus
Query: 3 tagttacccaacagcgggaatagaacggaatattgagcaatattcaaatcagtatgagaa 62
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tagttacccaacagctggaatagaacggaatattgagcaatattcaaatcagtatgagaa 628
Query: 63 agaaaaatgggaacgtaccaaagaagtctgatgtaagaaataaatagcaacatggtagat 122
|||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 627 agaaaaataggaacggaccaaagaagtctgatgtaataaataaatagcaacatggtagat 568
Query: 123 ttaaatacaggtgtttaaataatatcaaatgcaaatggtactgactcccagtttccaatt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttaaatacaggtgtttaaataatatcaaatgcaaatggtactgactcccagtttccaatt 508
Query: 183 aatgtctaaaaactgaaattaacaccattccagtctaacaaaaagattgtttttgtgtaa 242
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaggtctaaaaactgaaattaacaccattccagtctaacaaaaagattgtttttgtgtaa 448
Query: 243 tctacagaatcttttt----ttctgaagtcgtcacagagcagaagaaagactaacaaaaa 298
||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctacagaatc----taaaattctgaagtcgtcacagagcagaagaaagactaacaaaaa 392
Query: 299 gcccatgcacacatttcctttcatggtccattgtgaaaggaaatagtagaaaccaagcat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gcccatgcacacatttcctttcatggtccattgtgaaaggaaatagtagaaaccaagcat 332
Query: 359 ggcaggtgactcagagggaggtttctaagcccagtgatgtgcagactggtatcagaacat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggcaggtgactcagagggaggtttctaagcccagtgatgtgcagactggtatcagaacat 272
Query: 419 tgaagttctgagcaatgaagatacaaaagcatttcatgtcccactatcctgtaaattcca 478
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgaagttctgagcactgaagataaaaaagcatttcatgtcccactatcctgtaaattcca 212
Query: 479 ctgggactc 487
|||||||||
Sbjct: 211 ctgggactc 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
