BAC Information

Click to search

BAC

Clone NameMSMg01-382L16
Chromosome10 (Build37)
Map Location 83,974,940 - 84,154,078
singlet/doubletdoublet
Overlap geneCkap4, Tcp11l2, Polr3b
Upstream geneAldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225, C230099D08Rik, LOC432482, Nuak1
Downstream geneRfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382L16.T7 (MSMg01no382_l16.b1)MSMg01-382L16.TJ (MSMg01no382_l16.g1)
ACCAG486565AG486566
length756759
length of high quality
(start - end)		360 (34 - 393)414 (65 - 478)
definitionCHROMAT_FILE: MSMg01no382_l16.b1 PHD_FILE: MSMg01no382_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:33 2005CHROMAT_FILE: MSMg01no382_l16.g1 PHD_FILE: MSMg01no382_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,974,940 - 83,975,227)(84,153,665 - 84,154,078)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCTACT
GCTGTTGCATAGCTAAATTAATAACACCAAGCTGCCACCAAAATATTCTT
TTTATACTTATTGACAAATGCTTTTCTTTATAATGAATGGCAATGAATTA
GGAGATCCAAAGAATAATGTGATAGGTGAGCATAGTGGTGCACGCCTTTA
ATCCCAGCACTCAGGAAGCAGAGGCAGGAGGATGTCTGGGAGTTCAAGGC
CACCCTGTCTACATAGTGAGTTCCAGGACAGTCAGGGCTCTATAGAGAGA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATTATAATAATGATGATGATGATGATGTGACAGTTAAATGC
TCAGCCTTGACTGGGGCATCTGTATCATTCCCTCTGGGGTTATGGGAGTA
CTAAGGAATAGAGGGAGAGAACAATATATGGTTCTTAAAGTATTCAGTAC
TTCTGCGCTGGTATTGTCCCTCTGGTTCATGATCCTTCCATTCATCAATT
CTCCTCCCTTAACTGACTCTAACTAACTTTCCTAATTATGTCTTGTTTTT
ACTTGCTTTTCTTTATTTCTTTCCCTGGTTTATTTTATTTTTTCCCCTTT
CATTCTACCCTCTTTTTCTTCTTCCTATTTCTATCTCTCACTTTCCCCAC
TCTTGTTGCTAATTTATATCTCTTCTTTTCCTTTTCCTTTTTATCTTCCT
ATACTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXGGAAGAAACCGTGCTCCTTGCCAGAGCATGGATGCA
CCTGTGCTTCAGTCTTCACAGAACTTAGCGAAAGTCAGCAGAGAAACAAT
AGTCAAGTTGAACCTCATGGACCTTTTGTTGAGTCTGCACTGCACTAGGA
AGTACAATTTGTGTCATTTCAGTGACAACAAATAAAGCAGACAGGATACC
TGATGGTGGCCACTCACTGCTGTAGCCTACGACTGCTGCTGGGGTCATAA
CAGCTCACGGATAAGACATTTATGTCTCTCTATGAAACCATTTAAAGTTT
ACGTTGTGACTTCAGCTCCAACTGTGTAGTTGACGCAGCTTGAGCTGGGG
ATACAGGCACTGTCCCAGCAGGCTGCCAAGACAGGTCTTCTGAAACTGAG
ACAAGCATTATCATGCCACAGGGAAACCTAAGTGGCTGTCTCTCCACAAT
GGCTGTGGAGCCTGAGCCTGCTATAAACTGGGCTCTCAAGGCCAGAAGAG
AATCCTTCAGCATTGCTACTGGACACTTAATGGGAGAACGGCCAAATCCT
TTACCAATTTTAGGATAAGACTCCTTGGAAATTTTCTTTTAAAAAAAAAA
AAAAACCGTGGACAAACATTGTCACATGTGTTTTTAAATGCCCCACACGG
GGTTTTTTAACCTCTCATCAACTTAAATTTTTCTCCCCAATACATTTTTT
TCTTGGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_l16.b1 MSMg01no382_l16.b1 CHROMAT_FILE:
MSMg01no382_l16.b1 PHD_FILE: MSMg01no382_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:33 2005
         (360 letters)



>mm_chr10_83974733_83975492
          Length = 760

 Score =  511 bits (264), Expect = e-149
 Identities = 282/288 (97%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctactgctgttgcatagctaaattaataacaccaagctgccaccaaaatattctt 67
           |||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 208 gaattctactgctgttgtttagctaaattaataacaccaagctgccaccgaaatattctt 267

                                                                       
Query: 68  tttatacttattgacaaatgcttttctttataatgaatggcaatgaattaggagatccaa 127
           |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tttatactcattgacaagtgcttttctttataatgaatggcaatgaattaggagatccaa 327

                                                                       
Query: 128 agaataatgtgataggtgagcatagtggtgcacgcctttaatcccagcactcaggaagca 187
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agaataatgtgataggcgagcatagtggtgcacgcctttaatcccagcactcaggaagca 387

                                                                       
Query: 188 gaggcaggaggatgtctgggagttcaaggccaccctgtctacatagtgagttccaggaca 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gaggcaggaggatgtctgggagttcaaggccaccctgtctacatagtgagttccaggaca 447

                                                           
Query: 248 gtcagggctctatagagagataataataataataataataataataat 295
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtcagggctctatagagagataataataataataataataataataat 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_l16.g1 MSMg01no382_l16.g1 CHROMAT_FILE:
MSMg01no382_l16.g1 PHD_FILE: MSMg01no382_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:34 2005
         (414 letters)



>mm_chr10_84153465_84154278
          Length = 814

 Score =  801 bits (414), Expect = 0.0
 Identities = 414/414 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaagaaaccgtgctccttgccagagcatggatgcacctgtgcttcagtcttcacagaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ggaagaaaccgtgctccttgccagagcatggatgcacctgtgcttcagtcttcacagaac 555

                                                                       
Query: 61  ttagcgaaagtcagcagagaaacaatagtcaagttgaacctcatggaccttttgttgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttagcgaaagtcagcagagaaacaatagtcaagttgaacctcatggaccttttgttgagt 495

                                                                       
Query: 121 ctgcactgcactaggaagtacaatttgtgtcatttcagtgacaacaaataaagcagacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctgcactgcactaggaagtacaatttgtgtcatttcagtgacaacaaataaagcagacag 435

                                                                       
Query: 181 gatacctgatggtggccactcactgctgtagcctacgactgctgctggggtcataacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gatacctgatggtggccactcactgctgtagcctacgactgctgctggggtcataacagc 375

                                                                       
Query: 241 tcacggataagacatttatgtctctctatgaaaccatttaaagtttacgttgtgacttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcacggataagacatttatgtctctctatgaaaccatttaaagtttacgttgtgacttca 315

                                                                       
Query: 301 gctccaactgtgtagttgacgcagcttgagctggggatacaggcactgtcccagcaggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gctccaactgtgtagttgacgcagcttgagctggggatacaggcactgtcccagcaggct 255

                                                                 
Query: 361 gccaagacaggtcttctgaaactgagacaagcattatcatgccacagggaaacc 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gccaagacaggtcttctgaaactgagacaagcattatcatgccacagggaaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |