Query= MSMg01no384_a21.b1 MSMg01no384_a21.b1 CHROMAT_FILE:
MSMg01no384_a21.b1 PHD_FILE: MSMg01no384_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:15 2005
(488 letters)
>mm_chr10_82997312_82998200
Length = 889
Score = 866 bits (448), Expect = 0.0
Identities = 475/484 (98%), Gaps = 1/484 (0%)
Strand = Plus / Minus
Query: 6 gaattc-caataaacagttgggaagtaataatcacacgggcagaagaatatcaaaataca 64
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gaattcacaataaacagttgggaagtaataatcacacgggcagaagaatatcaaaataca 521
Query: 65 agagtgaacgaaactccacgcagccccgaattccaggctaaggaatccttttgggacaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agagtgaacgaaactccacgcagccccgaattccaggctaaggaatccttttgggacaaa 461
Query: 125 ggtttcactacagcatgtgtgcaagcttcttcatagaggcaagggacaaatgcaggtatg 184
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 460 ggtttcactacagcatgtgtgcaagtttcttcatagaggcaaggcacaaatgcaggtatg 401
Query: 185 agttatctactggggacgagaagtgtgcgacaaggccagcgaacagtatcttaccaaccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 agttatctactggggacgagaagtgtgcgacaaggccagcgaacagtatcttaccaaccc 341
Query: 245 tcatcctcagatgatgggggtatcagactatgcctaaagcaagggtgcccagcgccttat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tcatcctcagatgatgggggtatcagactatgcctaaagcaagggtgcccagcgccttat 281
Query: 305 cttcccagttcaagctggagctctacaagtgtgcctgtcgctttctggcgactgttaggc 364
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 280 cttcccagttcaagctggagctccacaagtgtgcctgttgctttctggcgactgttaggc 221
Query: 365 cggtaacttgcgaagtgttctaattcatttctgttgcgaaacaccccgacgaaaaagcaa 424
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 220 aggtaactttcgaagtgttctaattcatttctgttgcgaaacaccccgaggaaaaagcaa 161
Query: 425 cttaaaggagaaagggtttattcaatttaggagtccaggttactatccaccattgtccgg 484
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 160 cttaaaggagaaagggtttattcaatttaggagtccaggttactatctaccattgtccgg 101
Query: 485 aagt 488
||||
Sbjct: 100 aagt 97
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 889
Length adjustment: 10
Effective length of query: 478
Effective length of database: 879
Effective search space: 420162
Effective search space used: 420162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_a21.g1 MSMg01no384_a21.g1 CHROMAT_FILE:
MSMg01no384_a21.g1 PHD_FILE: MSMg01no384_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:16 2005
(485 letters)
>mm_chr10_82812409_82813295
Length = 887
Score = 905 bits (468), Expect = 0.0
Identities = 482/488 (98%), Gaps = 4/488 (0%)
Strand = Plus / Plus
Query: 1 aggagagctgaggagacaccccacgtccagtagtagtagtagtacagtatagtgcaataa 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggagagctggggagacaccccacgtccagtagtagtagtagtacagtatagtgcaataa 260
Query: 61 tgcagccgtattgcagtatagcgcagtaatgcagccgtattgcagtatagtgcagcaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcagccgtattgcagtatagcgcagtaatgcagccgtattgcagtatagtgcagcaatg 320
Query: 121 cagtcgtattgcagtagaggtgctgcttttagccatgctctgtgaatgataactcgaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtcgtattgcagtagaggtgctgcttttagccatgctctgtgaatgataactcgaggc 380
Query: 181 gttaccctcaggctccacatctgtgaagcagagtttagaactggcacgtacagcaacaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttaccctcaggctccacatctgtgaagcagagtttagaactggcacgtacagcaacaga 440
Query: 241 catttgctcagtgtgcgtgaggtcccgggcttcttccccaacacccaaagagccacagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catttgctcagtgtgcgtgaggtcccgggcttcttccccaacacccaaagagccacagtg 500
Query: 301 aagaacactctggagttaccactgccttgacgtcagagaggacaacttaacacgcaatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaacactctggagttaccactgccttgacgtcagagaggacaacttaacacgcaatac 560
Query: 361 aacacctgccaggatgaggccggggaagcttgaggggccatggattctagagtatc---c 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 561 aacacctgccaggatgaggccggggaagcttgaggggccatggattctagagta-caaac 619
Query: 418 ctttcccaacgtttgaaggtgaggaaaatcaataaaggggatataaaaatagactgaaat 477
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 620 ctttcccaacgtttgaaggtgaggaaaatcaataaaagggatataaaaatagactgaaat 679
Query: 478 gagaaaga 485
||||||||
Sbjct: 680 gagaaaga 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 887
Length adjustment: 10
Effective length of query: 475
Effective length of database: 877
Effective search space: 416575
Effective search space used: 416575
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
