BAC Information

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BAC

Clone NameMSMg01-385J07
Chromosome10 (Build37)
Map Location 75,512,917 - 75,513,306
singlet/doubletsinglet
Overlap genenone
Upstream geneRab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1, Susd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2
Downstream geneSlc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1, Pcbp3, LOC100041099, Slc19a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385J07.T7 (MSMg01no385_j07.b1)MSMg01-385J07.TJ (MSMg01no385_j07.g1)
ACCAG488748AG488749
length758786
length of high quality
(start - end)
467 (52 - 518)259 (57 - 315)
definitionCHROMAT_FILE: MSMg01no385_j07.b1 PHD_FILE: MSMg01no385_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:11 2005CHROMAT_FILE: MSMg01no385_j07.g1 PHD_FILE: MSMg01no385_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATACGACTCACTATTTCGAGAGGATCCGCGGAATTCAATGTTATTAG
GGAGGTGTTCAACATTTTGAAACCAAACTGAAGAGCAGACAAGTCACACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACGATTTTCAAGAGCTTTAGATGAGTGTGATAGAGCTGAAATTCCTCTC
CCCTGGGGGCCAGTTTGCTTTTAGGTTCTCTTTTGACCTAGATGACTAGT
CCTACAGCATTTTACCGCAACTTTGTAGTAATTCTCATCTTAGTAGATTC
TTAGTAGATGAGAATTATCTTAGTAGATGAGAATTCTTACTAGATGAGAA
TCATCTTAGTAGATGAGAATTAGAAAGGATAATGCCCCTGGCTTTGTTAA
TTTTACTCAAGTTGGGTTTGACTCTGGCTATTGTTTGCTTTGTGGTAGCA
TAGACATTTTCAGAATCCCCCCCCCCATTCTTTAAAGAATGTGATTGGTA
TTTTGATAGACATTGCTTTGGCAAGAACAAAAAATTAATCTTATTTTTCC
CCCCAGTGCACATGTGTATGCGTGTTTTAAAAAATATTTACTTATTTATT
TATTTATTTATTTACTTATTTATGTATTTATCCATTTATTATGTATACCC
TGCCTGAACTTGGCCCCATACAATCCAAAATAATGACACCCATTTTTTAA
CCCGGTGGGTTGTGAACCACTCAGGCCCTGGGTTTTTTCTCTTTGTTATC
CGATTCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCTGTTTAGCTCTGACCCCATTTTTAATAGGGTTATTTGGTTCT
CTGAAGTCTAATTTCTTGAGTTCTTTATATATTTTGAATATATATATATA
TATATCGGATGTAGGGTTGGTAAAGATATTTTCCCAATCTGTTGGATGCT
GTTTTGTCCTATTGACAGTGTCCTTTGCCTTATAGAAGCTTTGCAATTCT
ATGAGGTCCCATTTGTCAATTCTTTTTTTAAAATTTTTTTTTTTAAGATT
TACTTATTTACTACATATAAGTACACTGTAGCTATCTACAGACACACCAT
AAGAGGGCGTCCGATCTCATTATGGACGGTTGTGATCCACCATGTGTTTG
CTGGCATTTTAACTCCTGATCTTTCGAATAGTTTTCTATTGTTCTTAACT
TCTGTACCTTCTCCCCTGCCCCCATTTGTCCTTTTCTTGATCTTTTACCC
TATTTTTATCACTGCTCCGCTTCTTTACAATTTCTCTTTGTCTCTATTGT
GCTCATAAGCCCTTTTCTATTTTTTCCTTTTTCTTTATATTCTTCCTTTT
TTTCCCTTTTATTTCTTGCTCTTTTGTTCTTCTCTGCTTTTTTACCCGTC
CTCTCCTTTTAACTCTTCCCTTTTTTACCCTCGCATTCTCCCCTCTTGCC
CCCTTTTCTCTTCCCCCCCCTTTTCCTCTTTTTTTACCTTTTTCTTTACT
TCTCTTCCTTTACTTTTTTTTTTTCTTCTATCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_j07.b1 MSMg01no385_j07.b1 CHROMAT_FILE:
MSMg01no385_j07.b1 PHD_FILE: MSMg01no385_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:11 2005
         (467 letters)



>mm_chr10_75512703_75513570
          Length = 868

 Score =  569 bits (294), Expect = e-166
 Identities = 386/468 (82%), Gaps = 81/468 (17%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggtgttcaacattttgaaaccaaactgaagagcagacaagtcacacacacacacacacac 62
           ||||||||||||||||||||||||||||||||||||||||            ||||||||
Sbjct: 215 ggtgttcaacattttgaaaccaaactgaagagcagacaag------------acacacac 262

                                                                       
Query: 63  acacacacacacacacacacacacacacacacacacacacgattttcaagagctttagat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acacacacacacacacacacacacacacacacacacacacgattttcaagagctttagat 322

                                                                       
Query: 123 gagtgtgatagagctgaaattcctctcccctgggggc-cagtttgcttttaggttctctt 181
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 323 gagtgtgatagagctgaaattcctctcccctggggggtcagtttgcttttaggttctctt 382

                                                                       
Query: 182 ttgacctagatgactagtcctacagcattttaccgcaactttgtagtaattctcatctta 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttgacctagatgactagtcctacagcattttaccgcaactttgtagtaattctcatctta 442

                                                                       
Query: 242 gtagattcttagtagatgagaattatcttagtagatgagaattcttactagatgagaatc 301
           ||||||                                                      
Sbjct: 443 gtagat------------------------------------------------------ 448

                                                                       
Query: 302 atcttagtagatgagaattagaaaggataatgcccctggctttgttaattttactcaagt 361
                       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ------------gagaattagaaaggataatgcccctggctttgttaattttactcaagt 496

                                                                       
Query: 362 tgggtttgactctggctattgtttgctttgtggtagcatagacattttcagaatcccccc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgggtttgactctggctattgtttgctttgtggtagcatagacattttcagaatcccccc 556

                                                           
Query: 422 cccc--attctttaaagaatgtgattggtattttgatagacattgctt 467
           ||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccccccattctttaaagaatgtgattggtattttgatagacattgctt 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 868
Length adjustment: 10
Effective length of query: 457
Effective length of database: 858
Effective search space:   392106
Effective search space used:   392106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)