BAC Information

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BAC

Clone NameMSMg01-386F11
Chromosome10 (Build37)
Map Location 101,827,991 - 101,828,462
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413, Cart1, Lrriq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386F11.T7 (MSMg01no386_f11.b1)MSMg01-386F11.TJ (MSMg01no386_f11.g1)
ACCAG489331AG489332
length706726
length of high quality
(start - end)
247 (62 - 308)648 (79 - 726)
definitionCHROMAT_FILE: MSMg01no386_f11.b1 PHD_FILE: MSMg01no386_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:08 2005CHROMAT_FILE: MSMg01no386_f11.g1 PHD_FILE: MSMg01no386_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGACTCACTTTTTCGAACGGAGCCGCGGAATTCAGATA
GTCACAAAAGATGTGAAATACTTCAATTTTGGTTAAAGATAGAGTTGACA
AGTGAACTCTTTCCTTCTTTCCTTCTTTCCTACTTTCCTTCCTTCCCCTC
CCTTCCTTTCTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTCTTGCTTGAATCCATGCTTCCTTCTTTCCTTGCTTTATTCTTACATTC
TTACTTTTCATTTTTCTGTTAGAACTTGTATATATACGTGAAAGAATAAT
ACTGACACCTTAGGACTAAACTCGGTTTTTTACTAAATGGATTTTCTTCA
CTTCTTGTGTTTGGCCTCACTTTCTATCTTTAACATTCACAGGGGAATTT
TAATCCAGCAAGATGGCTCTTCTGGCATCCAAAGACCTTCTAAGTCTGGT
TGATCTAGCTGGGTTACATACATGCCCTTTCTACACGCCTTTAATCTAAA
ACAATGAAGATAAACATAGTTTAGAGGAAGAAGCAGCTATGTTTGAGAGT
GACATGTAATTGAGGTGACAAATCAGAGAACGATTTGGTAGAATTAATCA
GAGATAGATATCCCAACACTCAGGGGACCAGCACAGAACAGGCTACTTAT
GAGTAG
NACCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGCTGACTGAAGATTCAAAA
TCAAACAGATCATTTTCTGTTTGTGTTTAATGAGATCCACTTGGGGAATT
GGCACCAAAAGTGCAAGCGTGCAGTAAGGGTGACAAGACAGAAAGCCAGA
ACAAATGACTCAAGAGAGAGGTTGCGTCATGCTTTTGGATTTATTTATTT
TATATTTTTATCTATGGATGTTTTGTCTGAAAGGGTGTTTGTGCACACGT
GCAGGTCTGGTGTCCTGGGAGTCTAGTATAAGGCACTTGTTCACATGGAA
CTAGAATCATGGATAACTATGCACCACCATGTGGGTTCTGAAAACTGAAT
CCAAGTCCTCTGCAGAGTAAGTGCTCTTAATCACTGAGTTGGATCTCCAG
ACCCCAGGAGTTCTCACAGTTACTCAGTCATCAGAAAACTAGCTCCACAA
AGCCAACCTAGATCACGTCTGAATGTGGTACTCCCAATCTTAATATCTCC
TATTTGACCTCACCCCTCAGTTTCTGCAACTTCCTCAACACTATAGCAGA
GATTACTATGCTTCTAGCATATGACTCCCACAGTAGCAAACTGCACCTGA
ATAATAGAAACATCATGCTTTATATAACACAGGAGTTCACTTTCCTGTTT
TAACAGCAGTGCACAATAAAGTGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_f11.g1 MSMg01no386_f11.g1 CHROMAT_FILE:
MSMg01no386_f11.g1 PHD_FILE: MSMg01no386_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:08 2005
         (648 letters)



>mm_chr10_101827415_101828462
          Length = 1048

 Score =  874 bits (452), Expect = 0.0
 Identities = 467/472 (98%)
 Strand = Plus / Minus

                                                                        
Query: 176  atttttatctatggatgttttgtctgaaagggtgtttgtgcacacgtgcaggtctggtgt 235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 atttttatctatggatgttttgtctgaaagggtgtttgtgcacacgtgcaggtctggtgt 989

                                                                        
Query: 236  cctgggagtctagtataaggcacttgttcacatggaactagaatcatggataactatgca 295
            ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988  cctgggagtctaggagaaggcacttgttcacatggaactagaatcatggataactatgca 929

                                                                        
Query: 296  ccaccatgtgggttctgaaaactgaatccaagtcctctgcagagtaagtgctcttaatca 355
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928  ccaccacgtgggttctgaaaactgaatccaagtcctctgcagagtaagtgctcttaatca 869

                                                                        
Query: 356  ctgagttggatctccagaccccaggagttctcacagttactcagtcatcagaaaactagc 415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868  ctgagttggatctccagaccccaggagttctcacagttactcagtcatcagaaaactagc 809

                                                                        
Query: 416  tccacaaagccaacctagatcacgtctgaatgtggtactcccaatcttaatatctcctat 475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808  tccacaaagccaacctagatcacgtctgaatgtggtactcccaatcttaatatctcctat 749

                                                                        
Query: 476  ttgacctcacccctcagtttctgcaacttcctcaacactatagcagagattactatgctt 535
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 748  ttgaccttacccctcagtttctgcaacttcctcaacactatagcagagattactacgctt 689

                                                                        
Query: 536  ctagcatatgactcccacagtagcaaactgcacctgaataatagaaacatcatgctttat 595
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688  ctagcatatgactcccacagtagcaaactgcacctgaataatagaaacatcatgctttat 629

                                                                
Query: 596  ataacacaggagttcactttcctgttttaacagcagtgcacaataaagtgaa 647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628  ataacacaggagttcactttcctgttttaacagcagtgcacaataaagtgaa 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)