BAC Information

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BAC

Clone NameMSMg01-387E16
Chromosome10 (Build37)
Map Location 126,850,795 - 126,851,205
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc
Downstream geneR3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387E16.T7 (MSMg01no387_e16.b1)MSMg01-387E16.TJ (MSMg01no387_e16.g1)
ACCAG490059AG490060
length787784
length of high quality
(start - end)		---411 (79 - 489)
definitionCHROMAT_FILE: MSMg01no387_e16.b1 PHD_FILE: MSMg01no387_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:18 2005CHROMAT_FILE: MSMg01no387_e16.g1 PHD_FILE: MSMg01no387_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATAACTTTCCCCCCCCNNAAGNNNNCNCCNTTCCCCTTCTCTCTCTCT
TTTTCGGCGCACCTCTTTATTTCTTTCTTCTCTTTCTCCTCCACTAACTA
ATNCTCTTGCGGGGGGTTTACCTCTACTTAAAATCTACTTCTCCCCTTTT
CCTCTCCTTTTTGCGGCNNTTTGTAAAACAAAAAACCCACCGGGGGCAAA
AAAAAGGGGTGCCCCCCCTTTTTTTTTTCACGTTCGGGGTTTACAAAAGC
TTCTCTTAGGCCCNTACAAAAAAAGTTTCCCTTTTGGGGCAGGAAAAAGA
TTCCTTTTTCCAAAAGCGGGAAAAGTTTCCTCCCTTGGTAGGGGGGAAAA
TCCTTTTTCTTTTAAAGGGAAAAACTCTCTTTCTCGGGGGGGAAATGAAT
TTCTCTCAAAAAAAAACTTGGGGGGGAAAAAAAAAAAAAAAAAAATTTTT
TTTTTGGGGCCCCGCCCCCCCCCCCGTTTGTTTTGTGCCCCTAAATAATT
GCTGGGGGGGTTCTTTTTTTTCTCTCGAACGGGAGTATCTCGATAAATAA
ACAAGTGGGCCGTCCTCCCCACAATAAAAACAAATCCCACCTTTTGCGGG
TGCGGGCAAACTGCATTCCTTTATCTCCCCTCCACACATTCGCATTCTTC
CTCCTCTTTCTTGCTGGAGGGGGCGCGTATATTCCCGTCCTTCACACAAA
TCCCTATTGCGGTCCCCCTTGTACCAAACAATAACAT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGAGTGACACAGTATCAGG
TCTGTAATCAGTTCCTCATTCTTTAAGTAAACAGTGTGTTCTTGTTTGTT
TATTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCAGGAACTCACT
CTGTAGACCAGGCTGGCCTCAAGCCCACAACGATCCACCTGCCTCTGCCT
CCTCAGTGCTGGGACTAAAGGCATTTAATCTGTTTAGGTGACTAACTGGT
ATCCTTGCTAGCAGTTTTTGTAGCCAGTTGATTCTTGTTCACTTTACTAC
TGGTCAGTTTGTGAGTATAAAGTGGTTAGTCTGAATAAACCATGATACAC
ACTAGAGATTGCACTGGCATTTGATAGCAACATGGTGTGAGAACACAAGT
TGGAATGATTTCCCCCTTTTCTAATCTGTGTGTTGCTATGTATGAGCATG
ATGTAAATGTATGTGCAGATGCATGAACCCCATGCATTGTCCCTGTGCAT
TTCTTGCCAATGACGTTAAGGCCCCGACCCCCTCCTTTATCCAGATGCTC
CGCCTGTTGTTTCGATTTTTTGCCCAACTCGGCCCTGGTTCCCTCCCTAT
CCCCTCTCTTCCTCTCCCCTCTTTTTCATATCTCGCCCCCCGCTTTCTCT
TCTCATTTTTTTACCTTCACTCTCTTATCTGACCCCTCCCCCCGCCCTTT
TCTTTTATTTTCTGTCCCCTCTTTCTGCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_e16.g1 MSMg01no387_e16.g1 CHROMAT_FILE:
MSMg01no387_e16.g1 PHD_FILE: MSMg01no387_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:18 2005
         (411 letters)



>mm_chr10_126850595_126851405
          Length = 811

 Score =  787 bits (407), Expect = 0.0
 Identities = 410/411 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagagtgacacagtatcaggtctgtaatcagttcctcattctttaagtaaacagtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagagtgacacagtatcaggtctgtaatcagttcctcattctttaagtaaacagtgtg 260

                                                                       
Query: 61  ttcttgtttgtttatttgagacagggtttctctgtatagccctggctgtccaggaactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttgtttgtttatttgagacagggtttctctgtatagccctggctgtccaggaactca 320

                                                                       
Query: 121 ctctgtagaccaggctggcctcaagcccacaacgatccacctgcctctgcctcctcagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgtagaccaggctggcctcaagcccacaacgatccacctgcctctgcctcctcagtg 380

                                                                       
Query: 181 ctgggactaaaggcatttaatctgtttaggtgactaactggtatccttgctagcagtttt 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgggattaaaggcatttaatctgtttaggtgactaactggtatccttgctagcagtttt 440

                                                                       
Query: 241 tgtagccagttgattcttgttcactttactactggtcagtttgtgagtataaagtggtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtagccagttgattcttgttcactttactactggtcagtttgtgagtataaagtggtta 500

                                                                       
Query: 301 gtctgaataaaccatgatacacactagagattgcactggcatttgatagcaacatggtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctgaataaaccatgatacacactagagattgcactggcatttgatagcaacatggtgt 560

                                                              
Query: 361 gagaacacaagttggaatgatttcccccttttctaatctgtgtgttgctat 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagaacacaagttggaatgatttcccccttttctaatctgtgtgttgctat 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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