BAC Information

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BAC

Clone NameMSMg01-388H06
Chromosome10 (Build37)
Map Location 4,427,792 - 4,428,331
singlet/doubletsinglet
Overlap geneRgs17
Upstream geneOprm1, A130090K04Rik, LOC237252, LOC100041224
Downstream geneMtrf1l, Fbxo5, LOC666395, Vip, Myct1, Syne1, Esr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388H06.T7 (MSMg01no388_h06.b1)MSMg01-388H06.TJ (MSMg01no388_h06.g1)
ACCAG490945AG490946
length769749
length of high quality
(start - end)
544 (33 - 576)580 (70 - 649)
definitionCHROMAT_FILE: MSMg01no388_h06.b1 PHD_FILE: MSMg01no388_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:47 2005CHROMAT_FILE: MSMg01no388_h06.g1 PHD_FILE: MSMg01no388_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATATTTAT
TTTACACCTTCAAGAGCAGGAACTTATATGAAATGAGGACACATGTAGAC
TGTAATAAACACAAATATTTTTGTCAAGACAGATTTGGTTGATTACTGAT
CCCACCATTTAGTGACTTGTTTATCTGCCCAGCCTCAGTTTCCCTCAGTT
CGAAGATCCTGGGATACCTTTAAGCACAGATAGAATACACTGTACAGAAG
ATACACTTTACCACCAATTCATCATTTGCATAGGTATTCCATCATTTGAA
TAATTAATGTACTGAACAGTACCGTTCTTGCTCTTTACAAAGTTCCTGTT
ACTGTGTTACTGGTTCTGTATTTTAGTGTGAGATCGTGACTGCAAAGTAA
CTCATCGGATGCATGACTTAATTTATTAGCCATTCTTTACTTGTGAACCT
TTCTGTTCTTTCTACTGTCTGCCTATTTTTAACAGATGTATGTCTTTATT
CTCTTATTTTTATGTATACCTTTTTCCTTTAGGTTTATTATATACACTAC
GTAATTCTCATCAAGATATGGGGTTCTTCTCCAAAAAATTATTGCTAAGA
TGGTAGGTGAACTTAATATTTTTTAAAATGTACACATTTTACTCAAGAAG
ATTTAAACCACTTTGTGGCATGCTTGTAACGTCCTTTCCACTGGTGATTT
GTTTGTTCCCCTTACCCCCAGGCGGAGTGTAAACCATTTCAAAGGCTTTT
TTTTCCCTGGAAGGATACA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTCAACAGTCTGTGT
TGCGGGAACACTTCATTACCACCGTTCCCCAGCTGAAGAGTTCTGAATTC
ACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTTCATTAC
CACCATTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAATCCTTCTC
AACAGTCTGTGTTGCGGGAACACTTCATTACCACCGTTCCCCAGCTGAAG
AGTTCTGAATCTATTTAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGA
ACACTTCATTACCACCATTCCCCAGCTGAAGAGTTCTGAATTCACGCAGT
TGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTTCATTACCATGACC
CGCAGTTCTGGTTCCAGAATGAGGAATCTTCCCTGCGCCAGTGATGGTAA
CCGTCCCAGGTTTTCTCGTCCCAGGTTTTCTCGTCCCAGGTCTTCTCGTC
CCAGGTCTTCACGTCCCGGGTTTTCTCGTCCCGGGTTTTCGGCACCAACT
CTTACCCGCGTTCTCGCGACCAGCCAGGAAAGACACAACAAACCAGAATC
TTCTGCGGCAAAAGCTTTATTGCTTACATCTTTAGGAGCCAGAGAGCCAG
AGAGGCAGAGAGCCAGAGAGCCAGAGAGCCACAGAGCCCAAGAACCCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_h06.b1 MSMg01no388_h06.b1 CHROMAT_FILE:
MSMg01no388_h06.b1 PHD_FILE: MSMg01no388_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:47 2005
         (544 letters)



>mm_chr10_4427588_4428531
          Length = 944

 Score =  951 bits (492), Expect = 0.0
 Identities = 528/540 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatttattttacaccttcaagagcaggaacttatatgaaatgaggacacatgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatatttattttacaccttcaagagcaggaacttatatgaaatgaggacacatgt 264

                                                                       
Query: 65  agactgtaataaacacaaatatttttgtcaagacagatttggttgattactgatcccacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 agactgtaataaacacaaatatttttgtcaagacagatttggttgattattgatcccacc 324

                                                                       
Query: 125 atttagtgacttgtttatctgcccagcctcagtttccctcagttcgaagatcctgggata 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 atttagtgacttgtttatctgcccagcctcagtttccctcacttcgaagatcctgggata 384

                                                                       
Query: 185 cctttaagcacagatagaatacactgtacagaagatacactttaccaccaattcatcatt 244
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 cctttaagcacagataggatacactgtacagaagatatactttaccaccaattcatcatt 444

                                                                       
Query: 245 tgcataggtattccatcatttgaataattaatgtactgaacagtaccgttcttgctcttt 304
           ||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 445 tgcataggtataccatcgtttgaataattaatgtattgaacagtacagttcttgctcttt 504

                                                                       
Query: 305 acaaagttcctgttactgtgttactggttctgtattttagtgtgagatcgtgactgcaaa 364
           |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 505 acaaagttcctgttgctgtgttaccggttctgtattttagtgtgagatcgtgactgcaaa 564

                                                                       
Query: 365 gtaactcatcggatgcatgacttaatttattagccattctttacttgtgaacctttctgt 424
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 565 gtaactcatcggatgcatgacttaatttattagccattctttatttgtgaacccttctgt 624

                                                                       
Query: 425 tctttctactgtctgcctatttttaacagatgtatgtctttattctcttatttttatgta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctttctactgtctgcctatttttaacagatgtatgtctttattctcttatttttatgta 684

                                                                       
Query: 485 tacctttttcctttaggtttattatatacactacgtaattctcatcaagatatggggttc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tacctttttcctttaggtttattatatacactacgtaattctcatcaagatatggggttc 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)