BAC Information

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BAC

Clone NameMSMg01-389F17
Chromosome10 (Build37)
Map Location 57,364,626 - 57,365,077
singlet/doubletsinglet
Overlap geneLOC668374, Pkib
Upstream geneLOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363, Hsf2, Serinc1, LOC211619
Downstream genePpia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389F17.T7 (MSMg01no389_f17.b1)MSMg01-389F17.TJ (MSMg01no389_f17.g1)
ACCAG491631AG491632
length781724
length of high quality
(start - end)
452 (50 - 501)434 (88 - 521)
definitionCHROMAT_FILE: MSMg01no389_f17.b1 PHD_FILE: MSMg01no389_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:56 2005CHROMAT_FILE: MSMg01no389_f17.g1 PHD_FILE: MSMg01no389_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATTTCTAAAGTGGTGACATGACTAATGGCCCATGCACCTCT
GCATGAATCCTTCCTTTTCTCCTGAAAAGTTTGGGAACACTGGGGGAATG
AGGTCAGAGAAGAGCTCATGGCTGGTTGAGGAAAGTTTTCAGATTATTCA
CTACACGTTGCCTTCAAAGAATGGGTCAGATATAGAAAATATGACGACTT
TAGGTTAGTTGAGCTGCTATGGTAACCTTAGGACAGAACATCTCAATGTG
GGTTTAACTATACATAAAAAAAATGAGAGTTTTGCCTGGAAGTTGCTATG
CTAAACTAGAGTTGTACACTTAAATATTTTGTAGAGTTAAATTTTCTCTC
CTCTTTCTTTCTTGCTCTTTCTTTCCCTCCCTCCCGTTTGTCCTTCCTGA
GAGAGTCTTACTATGTAGCCACAAACGGTCTCATACAACATGTCTTCCTC
AGCCTCCCAAGTCCTGGAATAAACCTGTGTCATTGGACACCGCTCCCAAT
ATGTCCGGCCTACTTTTCCCGGAGCTTTGCGATTAATTCCTTGGTTCCCC
CCCTTTCCCGCCGACCCAAAGCTGCTACCGTTTTCTTCCTTTTCCCCCGG
ACACCCCTTACATCTCTTTTTTTCCTGTGTTGCCACCCTTGGGCCCCTTT
CCTTTTTTTTCCTCCCCCTCCCTTTTCTCTCCCCTTCTCCCGTCCTTTCT
CTCCCTCCCGACCTCCGTCCCCTCTTCGCTT
NCCCAAAAANCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTGAGAAGTCA
GGTGTTATTCTAATAGGTCTGCCTTTATATATTATTATGTTTTTTTTCTC
CTGAAGCTTTTAATATTCTTTGTTCTGTACATTTAGTGTTTTATTATAGT
TGAGGGATCTTTCTCTTCTGGTACAGTTTATATTTTATATGATCCTCTGT
ATACCTGTTGCACCTTGATAGGTATCTACTTTTTCAGATTAGAGGGGTTT
TCGTCTATGATTTTGTTGAAAATACTTTCTATTTCTTTGATCCTGGCTTT
TCCTCCTCCTCCTTCTTTTCTCCTCCTCCTCCTCCTTCTTCTTCTCTTTT
CTTTCTTCTTCTCTCTTCCTATTTTTTTTTTGTAAACTTACTCTTTTCAA
AATGTCCAATATTTCTTGGATGTTTTGTATCTGGCTGGATTTTTTTTTTA
AGACTTAACATTTTCTTTGACCAAGGTATCCATCTTTTTCTATTTTATCT
TCAGTGCCTGGGGCTCTCTCTTTTATCCCTTGGTTTCTGGTGGGGACCTA
TCCTTGAAGTTCCCATTGGAGTTCCCAAATTTTTCATTTCCAGAAGTCCT
TCCGTTGGGTTTTTTTTATTGTCCAAATTCCACTTCCGGGCCTGAATTTT
CTCTTTAAATCCATCCTTGGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_f17.b1 MSMg01no389_f17.b1 CHROMAT_FILE:
MSMg01no389_f17.b1 PHD_FILE: MSMg01no389_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:56 2005
         (452 letters)



>mm_chr10_57364424_57365277
          Length = 854

 Score =  762 bits (394), Expect = 0.0
 Identities = 437/452 (96%), Gaps = 2/452 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattccatttctaaagtggtgacatgactaatggcccatgcacctctgcatgaatcct 62
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattccatttgtaaagtggtgacatgactaatggcccatgcacctctgcatgaatcct 262

                                                                       
Query: 63  tccttttctcctgaaaagtttgggaacactgggggaatgaggtcagagaagagctcatgg 122
           ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 263 tccttttctcctgaagagtttgggaacactgggggaatgaggtcagagaagaactcatga 322

                                                                       
Query: 123 ctggttgaggaaagttttcagattattcactacacgttgccttcaaagaatgggtcagat 182
           ||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 323 ctggttggggaaagttttcagattatttactacatgttgccttcaaagaatgggtcagat 382

                                                                       
Query: 183 atagaaaatatgacgactttaggttagttgagctgctatggtaaccttaggacagaacat 242
           ||||||||||||| ||||||||||| ||||||||||||||||||| || |||||||||||
Sbjct: 383 atagaaaatatgatgactttaggttggttgagctgctatggtaactttgggacagaacat 442

                                                                       
Query: 243 ctcaatgtgggtttaactatacataaaaaaaa--tgagagttttgcctggaagttgctat 300
           ||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||
Sbjct: 443 ctcaatgtgggtttaactatacataaaaaaaaaatgaaagttttgcctggaagttgctat 502

                                                                       
Query: 301 gctaaactagagttgtacacttaaatattttgtagagttaaattttctctcctctttctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gctaaactagagttgtacacttaaatattttgtagagttaaattttctctcctctttctt 562

                                                                       
Query: 361 tcttgctctttctttccctccctcccgtttgtccttcctgagagagtcttactatgtagc 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 563 tcttgctctttctttccctccctcccttttgtccttcctgagagagtcttactatgtagc 622

                                           
Query: 421 cacaaacggtctcatacaacatgtcttcctca 452
           ||||||||||||||||||||||||||||||||
Sbjct: 623 cacaaacggtctcatacaacatgtcttcctca 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 854
Length adjustment: 10
Effective length of query: 442
Effective length of database: 844
Effective search space:   373048
Effective search space used:   373048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)