BAC Information

Click to search

BAC

Clone NameMSMg01-389M14
Chromosome10 (Build37)
Map Location 89,408,459 - 89,408,931
singlet/doubletsinglet
Overlap geneAnks1b
Upstream geneTmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, LOC100043039
Downstream geneLOC544719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389M14.T7 (MSMg01no389_m14.b1)MSMg01-389M14.TJ (MSMg01no389_m14.g1)
ACCAG491958AG491959
length737751
length of high quality
(start - end)
84 (237 - 320)505 (83 - 587)
definitionCHROMAT_FILE: MSMg01no389_m14.b1 PHD_FILE: MSMg01no389_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:30 2005CHROMAT_FILE: MSMg01no389_m14.g1 PHD_FILE: MSMg01no389_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCCCTTAATAATTGGGGNCGCTAAANGAATCCTACTGCCACACCA
TCCGCGGAATTCAGCGTTTCTCAACTCGCTTTAACTTTAAAAATACCAAT
TAAATGTCTGAAGCAACATGTTGAAAAGCAGAGATGAAATTTAAAGTGAG
AATAGGAAAGGTCTTCCACAAATATCGCCTAAGAGAGGCTTCATTACACA
AACTGGATTGCAAGCCATGGGAACAAATCAGACAGGTGGTAGGCAAGCTT
GACCTCTGAGCTGTGCTGTGTCCTGTCCTTAATACTTCCAAACCTTAGGA
AAAATGCTTTTTATAAAAAGAGATCTTTTTCTTCATTAGAGTTCAGCGCT
TATTCTGCCATGATTTCTTGCACTTTCAGCAAGTACTTTTAGTTTTCTGA
CTTCCTGTAGGCAAACTTGTACGAGGAACAAGTGGTGCTTCTAGAGTCAC
GTCACAGCTTCTACACAGTCACCCCGAGAACACCCCAATCCACTCCTACC
CGCCATTGTGCCCTCCCCTTCCTCCGAAAAGCTCACACCCTTACCACTCC
CCCCTCATCTCTGACGCGTTTTGGCTTCGTCCTCAAGGCTGCCAGCACCA
GGCGACCCCCTCTACCACTGTCCCGCCCTCCCACCCCTGTCCCCCTCCCC
CCTGACCTCCCCCTGTCCCCCGTCCCCCCCCCCCCCACCCTTCTCCCCTC
CTTCCCCCCCCCCTTTCCCCCCCCTCCTTCCCCCTCC
NCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACCAGATCACATGATA
AGACTTCTAGGACTATGAGATTATTTTCTATTATTATATTTAAAGATTTA
TTTATTTTATGCATGTGAGCACACTGTTGCAGTCTTCAGACACACCCGAA
GAAGGCATGAGGTACAATTACAGAAGCTGTGAGCCACCATGTGGTTGCTG
GGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTG
AGCCATCTCCAGCCTTCCTGCTATTATATTTATTTGAATACTTAAACTTT
TACATAAATAAATAACTATAAACAAATTACTGAATACAAACTCTCAGAAA
GATGATTTTACTTCCTCAATACAGATAATAATCAAATGACGACAACATCA
CAGGAAAACAGAATAACCTGTACCAAGAAAACCAAATGTTTGTGTGCTCA
GTTAATATTATTATTTCACTAGCACAACCAATATTTCCTCTCAGGGGGAT
TATAAATACTGTTTACACTATAATATGGATTTTTCCTGAGGCCTAAGAAA
CTCATGAAAGATACCATTTCCTTTGAAGAAGAAATAATAGAANATTTAAT
TTTCTTCTATCATGTTATCAAGACTAATACTATAGAGAGTAAAATGTTAC
CTCTAACCTAAGAGCACTGCTAAAACTTTGATGCTGGAAGGAGGCTCGCC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_m14.g1 MSMg01no389_m14.g1 CHROMAT_FILE:
MSMg01no389_m14.g1 PHD_FILE: MSMg01no389_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:30 2005
         (505 letters)



>mm_chr10_89408027_89408931
          Length = 905

 Score =  876 bits (453), Expect = 0.0
 Identities = 468/473 (98%)
 Strand = Plus / Minus

                                                                       
Query: 33  atgagattattttctattattatatttaaagatttatttattttatgcatgtgagcacac 92
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 atgagattattttctattattatatttaaagatttatttattttatgcatgtgagcacac 846

                                                                       
Query: 93  tgttgcagtcttcagacacacccgaagaaggcatgaggtacaattacagaagctgtgagc 152
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 845 tgttgcagtcttcagacacaccagaagaaggcatgaggtacaattacagaagctgtgagc 786

                                                                       
Query: 153 caccatgtggttgctgggatttgaactcaggacctctggaagagcagtcagtgctcttaa 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 caccatgtggttgctgggatttgaactcaggacctctggaagagcagtcagtgctcttaa 726

                                                                       
Query: 213 ccactgagccatctccagccttcctgctattatatttatttgaatacttaaacttttaca 272
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 725 ccactgagccatctccagccttcctgctattatatttaagtgaatacttaaacttttaca 666

                                                                       
Query: 273 taaataaataactataaacaaattactgaatacaaactctcagaaagatgattttacttc 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 taaataaataactataaacaaattactgaatacaaactctcagaaagatgattttacttc 606

                                                                       
Query: 333 ctcaatacagataataatcaaatgacgacaacatcacaggaaaacagaataacctgtacc 392
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 605 ctcaatacagataataatcaaatgacgacaaaatcacaggaaaacagaataacctgtacc 546

                                                                       
Query: 393 aagaaaaccaaatgtttgtgtgctcagttaatattattatttcactagcacaaccaatat 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aagaaaaccaaatgtttgtgtgctcagttaatattattatttcactagcacaaccaatat 486

                                                                
Query: 453 ttcctctcagggggattataaatactgtttacactataatatggatttttcct 505
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttcctctcaggaggattataaatactgtttacactataatatggatttttcct 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)