Query= MSMg01no390_d10.b1 MSMg01no390_d10.b1 CHROMAT_FILE:
MSMg01no390_d10.b1 PHD_FILE: MSMg01no390_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:03 2005
(243 letters)
>mm_chr10_124612769_124613411
Length = 643
Score = 460 bits (238), Expect = e-134
Identities = 241/242 (99%)
Strand = Plus / Plus
Query: 1 gttgacctctgtcaccctctgattgcatgagcttggaactgtgtctgtgtgcttcatgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttgacctctgtcaccctctgattgcatgagcttggaactgtgtctgtgtgcttcatgag 260
Query: 61 cctcccctgtacagaggggacaatgtaactcctatgaattaatacaaagatcgatacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcccctgtacagaggggacaatgtaactcctatgaattaatacaaagatcgatacaaa 320
Query: 121 ttgatatgaagaaatgattgcaacagtgtacttgttcatcatggtagcaatcatttggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgatatgaagaaatgattgcaacagtgtacttgttcatcatggtagcaatcatttggaa 380
Query: 181 tgtattacaattaaagtttatttgaatattcatctttttgtttattttcgtgaatgcttt 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tgtattacaattaaagtttatttgaatattcatctttttatttattttcgtgaatgcttt 440
Query: 241 ta 242
||
Sbjct: 441 ta 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no390_d10.g1 MSMg01no390_d10.g1 CHROMAT_FILE:
MSMg01no390_d10.g1 PHD_FILE: MSMg01no390_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:03 2005
(474 letters)
>mm_chr10_124773842_124774715
Length = 874
Score = 814 bits (421), Expect = 0.0
Identities = 464/490 (94%), Gaps = 20/490 (4%)
Strand = Plus / Minus
Query: 1 ctttaaagggaagagggtgagcacagccagcttatctctagtagacacaaaacattcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttaaagggaagagggtgagcacagccagcttatctctagtagacacaaaacattcttc 502
Query: 61 tactacacaccatcactcttccaccacacagcatcactgtgtcctcagtcccaagactca 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 tactacacaccatcactcttccaccacacagcatcactgtgtcctcagtcctaagactca 442
Query: 121 caaggtgtgctctgtgggtccacatcaggggtagccattaaatacggcctttaccttcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaggtgtgctctgtgggtccacatcaggggtagccattaaatacggcctttaccttcag 382
Query: 181 gcttagttggctaaatacatgttttgggtacaacatccttgttaaagggattttgtttac 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 gcttagttggctaaatacatgttttgggtacaacgtccttgttaaagggattttgtttac 322
Query: 241 tgtaatttttttcatacaatatattttaatcattttctttctcctcaagtttctcctgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaatttttttcatacaatatattttaatcattttctttctcctcaagtttctcctgaa 262
Query: 301 ttcttcccaactgcctatgttctttggtttctctctttctccaaaacagtaaaaacaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttcccaactgcctatgttctttggtttctctctttctccaaaacagtaaaaacaata 202
Query: 361 aacacgcacgcacacacacacaca----------------cacacacacncagagagaga 404
||||||||| |||||||||||||| ||||||||| ||||||||||
Sbjct: 201 aacacgcacacacacacacacacatacacacacacacacacacacacacacagagagaga 142
Query: 405 gagagagagaaagagagagagagagagagagacagagagacagagagacagagagacaga 464
|||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 141 gagagagagagagagagagagagagagagaga--gagagacagagaga--gagagacaga 86
Query: 465 gagacagaga 474
|||| |||||
Sbjct: 85 gagagagaga 76
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
