BAC Information

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BAC

Clone NameMSMg01-391M15
Chromosome10 (Build37)
Map Location 103,244,589 - 103,244,818
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391M15.T7 (MSMg01no391_m15.b1)MSMg01-391M15.TJ (MSMg01no391_m15.g1)
ACCAG493478AG493479
length776757
length of high quality
(start - end)
341 (64 - 404)231 (85 - 315)
definitionCHROMAT_FILE: MSMg01no391_m15.b1 PHD_FILE: MSMg01no391_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:07 2005CHROMAT_FILE: MSMg01no391_m15.g1 PHD_FILE: MSMg01no391_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCAGACCATCCGCGGAATTCTAGTGT
GTCTCTCCTGAGCTTTATGGGTAACATCCATTGATAAGTGAGTACATACT
GTCCATGTCCTTTGGTGTCTGAGATACCTCATTCACAATATTTTCTAGCT
CCATCCATTTGCCTGCAAATTGATTATGTCCTTGTTTTTAGTAGCTAAAT
AGTATCATGTTGTGTAAATTAACATTTTCTTTATACATTTTTCAGTTGAG
GTATATCTAGGTTGTTTTCAGTTTCTGGATATGATGAATAAAGCTGCTAT
GAATATAGTTTATTTAGTGTCCTTGTTAGACAAGGATTTTTGGGGTATAT
GTCCAGGGTTAGCTGGATCTTGGGGTAGAACTGTACTAATCCTCTGATAA
AGCATCACATTGCAATGGAAGAGTATTCCACTTGCTCTACATGCTCAACA
GCATGGACTGTCTATTGAGTCTTCGATCTCTGCCACACTGATGGGTATAA
GGTGAAATCTCAGAGCAATTTTAACCTGCCTTTCCATGCCTGGTAAAGAC
AGTGAACATTTCCTTTAGATGTTCCTTCCCCCTTTGAACTCCCCCCTGTT
GAAGAATCCTGCTTAATCCAACCCCCCGCTCTCTAATTGCGAAAATTTGG
ACGGCCTCGCACCCCCCCTCTATAACCCCTTCCGCCCCTCCCCTCTTTCC
CCCCCCCCCCACCCTCATCCTCCGCCCCATTACTCCACCCCCCCTCTAAT
CACCTCCCTCTTACCCCCCCTTGCCC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACAGNGNGGNCATGAAGCAACCATAT
AAAAAGTTACACTACTGATTCTGAAAATGGGTGGCAGATGGGACCAGTGC
CCTGCCCTTGCCCCAGTGTCACCCAAGTCAATGTCTCTGCTTGGCCCACA
GGCCAGCCTCTTGAATGGAGCTGCAGCTGCTGTACCTGCTTGCACTCTTT
ACTTTGCTGGTGGGAGCAGAGCATGGTTAGCCTGATTCTGAGCAAGGTCA
GAGTATCCGAGATTAAGATCGTTTCATTTTCAGGNTTGATTCTCCTTGAA
AGACTTCCTTGATACTTGCTGGAGGTCATGTTGATGTCTGTGAGTCCTGA
TGCCACCAGAAACCATGTTGAGATCTAACAGCTAGGATGCTTCCAGATAA
CATATTGATGTTGATGATATCAGCAGCCACTAAAAATTATGTTGATGCCT
ACCACATAAATGGCTGCTATGGCCAATGAAGCCTCTTTAGCGGGAGCATG
AAGGCACGCACACGCATTAACAGAGAATGAGAGACTTTCAAGTCTTTCTG
TGATAAATCCTCTTACCATCCCCTACAAAACAACACCAACCGATTTTTTC
TTTTTTTTATCGAGACAGCCCCTAAAAACCGCCACAAACATGCTAACGCG
CACCTCCTCACAGCTGATCCCCCCCACTACGCCCCGCACAACAATTCTCT
TCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_m15.g1 MSMg01no391_m15.g1 CHROMAT_FILE:
MSMg01no391_m15.g1 PHD_FILE: MSMg01no391_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:07 2005
         (231 letters)



>mm_chr10_103244388_103245018
          Length = 631

 Score =  391 bits (202), Expect = e-113
 Identities = 223/230 (96%)
 Strand = Plus / Plus

                                                                       
Query: 2   atgaagcaaccatataaaaagttacactactgattctgaaaatgggtggcagatgggacc 61
           |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 202 atgaagcaaccatataaaaagttacactaccgattctgaaaatgggtggcaaatgggacc 261

                                                                       
Query: 62  agtgccctgcccttgccccagtgtcacccaagtcaatgtctctgcttggcccacaggcca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agtgccctgcccttgccccagtgtcacccaagtcaatgtctctgcttggcccacaggcca 321

                                                                       
Query: 122 gcctcttgaatggagctgcagctgctgtacctgcttgcactctttactttgctggtggga 181
           | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 322 ggctcttgaatggagctgcagctgctgtacctgcttgcactctttaccttgctggtggga 381

                                                             
Query: 182 gcagagcatggttagcctgattctgagcaaggtcagagtatccgagatta 231
           |||||||||||| ||||||| |||||||||||||||||||||| ||||||
Sbjct: 382 gcagagcatggtcagcctgactctgagcaaggtcagagtatccaagatta 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)