BAC Information

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BAC

Clone NameMSMg01-392K15
Chromosome10 (Build37)
Map Location 36,364,768 - 36,365,279
singlet/doubletsinglet
Overlap geneHs3st5
Upstream geneLOC100041585, LOC667860
Downstream geneHdac2, Marcks, LOC100040846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392K15.T7 (MSMg01no392_k15.b1)MSMg01-392K15.TJ (MSMg01no392_k15.g1)
ACCAG494146AG494147
length761792
length of high quality
(start - end)
524 (74 - 597)328 (72 - 399)
definitionCHROMAT_FILE: MSMg01no392_k15.b1 PHD_FILE: MSMg01no392_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:16 2005CHROMAT_FILE: MSMg01no392_k15.g1 PHD_FILE: MSMg01no392_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCG
CGGAATTCTCAACTTACGAAACCAAATGGCTGAGAAGCACCTGAAAATAT
ATTCAACATCCCTTAATCATCAGAGAAATGCGAATCAAAACGAAAGCAAA
TCTTAAAGTAGCATCACAAAATGAACTAAATCAGGAATGGCTAGGTTTTA
ATATGTATTCAAATATAGGCTTGGTCGCCATTCTTCTGAGTGAGAGTAAG
AAATTTATCCATTAGTTTCCTGAATAAGAACTTTCAACAGCCACTTTTAC
TCTACCAATTGAGATATCCTTTAGATATTTTTAATTGCTTCTTTAGATAT
TTTCCATTGGACTTTGCTTAACATCACTGACAACGATTATAGTTACATCA
GTGCTCTGAACATTTACCACTAATATATGAGTATAAAGTATAAAGAAGAA
CAAATAGCATCTAGAGCCATAGCATCACTTACAGATCACTGGATCATTGA
TGAAATGTAATAAATCTTAGTAAAGGAAACTGAGCTTACTGCTTATTAAT
GTATGCAGGTGTTTGCTCTAATATAGGAGAACTTTGAAGTAAGAATCTCA
AGTATAAAAATTAATGTATAAAGTATCATCACTCAGCCCAATGTTGGTAA
TAAGAAACTGATCCTCTCTGAAATGAATCTATTTTGACTTCCCGACATCC
CAGCGAAATAGAANACCCTCCGCCCGCCTACCCAGACTAAGTCCACCAGG
CCATTCTGTCN
CATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTTCATGTGGCTATCTTCTTTTAGGTTT
GTTGAAAGATTACTTTCTTGCTTTTCTAGGGTGTAGTATCCGTCCTTGTG
TTGGAGTTTTCCCTTTATTGTCCTTTGGAGAAAGATGTTGTGTAAATTTG
ATTTTGTCAAAGGAATAACTTGGTTTCTCCACCTATGGTAATTGAGATTT
TTTACTGGTTATGGTATCCTGGGCTGGCATTTGTGTTCTCTTTGGGTCTG
TATGACATCTGCCCTTTATCTTCTGGCTTACATAGTCTCTGGCAAGAAGT
CTGATATAATTATGATAGGCCTACCTTCATATGTTACCTGACCTTTTTAT
CTCATTGCTCCCAATATTCTTTCTTTATTTTGTGCATTTGGTATTCTGAT
TATCATGTGACTGCAACAATTTCTTTTCTGCGCCCAACTATTTGCCCTTC
TGTCCGTTCTTTGCTTGCCCATGCGCCATCCTCTCTTCTACTCCCGCTAC
TTCTTCCTCCTCCCCCCTCCCTCCCCTTCTCCCCCCTTTCCCTCCTTCCC
CTCCCATCCCTTTCCCTTTCTTCTTCATCTCCCTCTCCTCCCCGCTCTCT
CTCCTCTTCCCCCTCTCCTTTCCCTTCCTCTTCCTCTTTCCCCTCCCCCC
CCTTCTCTCTTCTCTTCCCCCTCTTCTCTTCCTCCTCCCTCTTTTCTTCC
CCTTCCCCTCTCCTCCCTTTCCTTTTCCTCTTTTACTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_k15.b1 MSMg01no392_k15.b1 CHROMAT_FILE:
MSMg01no392_k15.b1 PHD_FILE: MSMg01no392_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:16 2005
         (524 letters)



>mm_chr10_36364593_36365516
          Length = 924

 Score =  833 bits (431), Expect = 0.0
 Identities = 496/523 (94%), Gaps = 11/523 (2%)
 Strand = Plus / Minus

                                                                       
Query: 2   aatggctgagaagcacctgaaaatatattcaacatcccttaatcatcagagaaatgcgaa 61
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 687 aatggctgagaagcacctgaaaatatattcaacatcccttaattatcagagaaatgcaaa 628

                                                                       
Query: 62  tcaaaacgaaagcaaatcttaaagtagcatcacaaaatgaactaaatcaggaatggctag 121
           |||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 627 tcaaaatgaaagcaaatcttaaagtagcatcacaaaatgaactaaattagtaatggctag 568

                                                                       
Query: 122 gttttaatatgtattcaaatataggcttggtcgccattcttctgagtgagagtaagaaat 181
           ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 567 gttttaatatgtattcaaatataggattggttgccattcttctgagtgagagtaagaaat 508

                                                                       
Query: 182 ttatccattagtttcctgaataagaactttcaacagccacttttactctaccaattgaga 241
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttatccattagtttcctgaataggaactttcaacagccacttttactctaccaattgaga 448

                                                                       
Query: 242 tatcctttagatatttttaattgcttctttagatattttccattggactttgcttaacat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tatcctttagatatttttaattgcttctttagatattttccattggactttgcttaacat 388

                                                                       
Query: 302 cactgacaacgattatagttacatcagtgctctgaacatttaccactaatatatgagtat 361
           |||||||||||||||||||||||||| |||||||||||||||  | |||||||||| |||
Sbjct: 387 cactgacaacgattatagttacatcaatgctctgaacatttaaaattaatatatgaatat 328

                                                                       
Query: 362 aaagtataaagaagaacaaatagcatctagagccatagcatcacttacagatcactggat 421
           ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | 
Sbjct: 327 aaagtataaagaagaacaaatagcatctagaaccatagcatcacttagagatcactg-a- 270

                                                                       
Query: 422 cattgatgaaatgtaataaatcttagtaaaggaaactgagcttactgcttattaatgtat 481
            ||||        |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 -attg--------taataaatcttagtaaaggaaactgagcttactgcttattaatgtat 219

                                                      
Query: 482 gcaggtgtttgctctaatataggagaactttgaagtaagaatc 524
           ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 218 gcaggtgcttgctctaatataggagaactttgaagtaagaatc 176


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)