BAC Information

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BAC

Clone NameMSMg01-393C18
Chromosome10 (Build37)
Map Location 37,105,665 - 37,106,133
singlet/doubletsinglet
Overlap genenone
Upstream geneHs3st5, Hdac2, Marcks, LOC100040846
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393C18.T7 (MSMg01no393_c18.b1)MSMg01-393C18.TJ (MSMg01no393_c18.g1)
ACCAG494534AG494535
length7791,359
length of high quality
(start - end)		473 (37 - 509)---
definitionCHROMAT_FILE: MSMg01no393_c18.b1 PHD_FILE: MSMg01no393_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:59 2005CHROMAT_FILE: MSMg01no393_c18.g1 PHD_FILE: MSMg01no393_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAA
CCTAAATCTTTACAGAGGTCCCACTATCAGTGGAGCACCAAGTGTCAGAG
TGCTGTTAGCACTTGCCATGGACAGGAACCTCAGCAAGAGCTTCCCTTGT
CTAAGCCACTTGTATGAACTACAAAACAGCAGCAAGGTATCTATGCAGCA
AACTGCTATTCCATTTAGCAAACAACGAATTGTATGATGTTGAGTTCTGA
AAGTCCAACAACTAATAATCTGAGTCAGGATTCTGATGCTGATAGTTGGG
CTCCAGTCTAACTCTAGAGCCCTTTCTCAAAAGCTTTAAGTAAGAAAAAG
GTACTTTTCCAGTGTCCCACACTCCTGGGTTACAACCAAGGTTTTCTGAG
TCATGATACAAGGTTCTCTCTCTCCATAGATCCAACTACTGTTATCATTT
TTTCTTCTCCTCTCCTTCCTCTTTCCATGCCTGCCTTCCTTCCTTCCTTT
CTTTTTTCTTGTTTAAAATTTTCACATAAGAAGTCAGTACTCTATCTTGT
TTAGGCACAGTCTCTCTTGTTTCCTCTCTTCAAACTCCAAGCTAGCTGGN
TCACTGGGCTTTCCAGAGAATCTCTTGGCTTCACTTCGCACCTTGCTTTA
AAGGGTGAGATAACGACTTGAACCACAAATCTGGCCTTCTACCCAAACAA
GGAAACCATTCCGGGCTCCCTTGTTGGGAAAAATTGACCCCCGACCCCCC
CTTGGCCCCCCCATGTTTTTCCAAAACCA

ATCATAGAGTAGGAATAGCTGGTACTCGTTCCGATCGAAGNAGAGAATTA
CANATATAAATTGCGTGGGTTGTGCTGCGGTGATCTAATGGTCTAAATTT
CATACGTGGCTACGTAGTTCACACCCTCATCTCCGCGCCGATGCAGTCAT
ACATTGAAATGTTAGAAGGAGCTTGTAGTTACTGTGCTCCTGTTTCACAT
ACCACTACCTCTGTCTGCATATGCTTTGTACTGTAACTTAGTGCGTTACA
TCGATGACGACTATGTGTACTCGGCGATGCTGACATTTCTATCTCTATTT
GCTTGCTCCTCTATCTCCTTAGTGGCTGCAACCCGCGCACTTCCAAACAC
ACATGAATACTATGATTCCCACAGAACACCGACGATAACGCCCATATCTC
TCTGCTCGCATTGCTCTATGTATCTTGTTCGTCTTTTCTACTTCTATCTC
GATCATACGTATAAGCGTATCGTGATCGAGTAGATGAGTTACGAGACGAG
TGAGCGAGAGAGAGTATAACATACAGAGCATGTTACTTATTCTGATGATA
TAGAATATCAATACGATAGTGTACGCCGAGTTATGGCNTGCAGACGGCAG
AGGTGAAGTGCTGGGTGTGAGATGGATGTCTGATGATGAGTGCGGACCGG
CNTAGTAGTGTCTGGTCATCTAATAGTACATCAAAGTGGGATCATGAACG
CGACACGACAGGTCGGATCGCACGCGCGGTACCGCGACGATACAGCCGCG
TGCGGCAATACACTATATACACCTCACACGCTACTATAAGAGTATCGCTA
ACCTACATGTACGCACCACGCATCATGCGAGTCGTTGCATTCTATCCGTG
CGATCGGGATATGCACACAGATAGATAAGATCGCACATCGATTTCGCGAT
ATCTCGTCATACACANCACTATGCGCATGGACGATATTATCTATAGCTNG
TAGGTGTCGTCTCGACTATTCTGTCAACATAGTCGCATGCAGAGAATATT
GAGGGTAGCAATCGCTNCAGTATCCCACTCCTGTGACAAGTCACTATTAC
TGTACTATTAGAGATAGAGCAGTATANAGACATCAGCCACATGATACACT
CCGCTGACTATATCTGCGACTTATATCTCTATCCGCTGTGTATTACGTTC
GCGTTCGATGAGTTGGNATAATCGTAGTACTGCGTACTCNCGTGTTGCAT
GGCGGTCATGATGCGAACTGTATGNCGTCGGCGTGNGTATCGCGAGCTGC
GACAGACCACGACACAGACGTATGGACAAGTGGCTGTGATACAATGCGTA
TGATATATTCTGGCATCTCTGTGTACTACGCATGGTATTAACGNTAGATA
TAATATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_c18.b1 MSMg01no393_c18.b1 CHROMAT_FILE:
MSMg01no393_c18.b1 PHD_FILE: MSMg01no393_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:59 2005
         (473 letters)



>mm_chr10_37105520_37106392
          Length = 873

 Score =  845 bits (437), Expect = 0.0
 Identities = 461/469 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaacctaaatctttacagaggtcccactatcagtggagcaccaagtgtcagag 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gaattcttaacctaagtctttacagaggtcccactatcagtggagcaccaagtgtcagag 555

                                                                       
Query: 65  tgctgttagcacttgccatggacaggaacctcagcaagagcttcccttgtctaagccact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tgctgttagcacttgccatggacaggaacctcagcaagagcttcccttgtctaagccact 495

                                                                       
Query: 125 tgtatgaactacaaaacagcagcaaggtatctatgcagcaaactgctattccatttagca 184
           ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 494 tgtatgaactacaaaacagcagcaaggtatctatgcaacaaactgctgttccatttagca 435

                                                                       
Query: 185 aacaacgaattgtatgatgttgagttctgaaagtccaacaactaataatctgagtcagga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aacaacgaattgtatgatgttgagttctgaaagtccaacaactaataatctgagtcagga 375

                                                                       
Query: 245 ttctgatgctgatagttgggctccagtctaactctagagccctttctcaaaagctttaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 374 ttctgatgctgatagttgggctccagtctaactctagagccctttctcaaatgctttaag 315

                                                                       
Query: 305 taagaaaaaggtacttttccagtgtcccacactcctgggttacaaccaaggttttctgag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 taagaaaaaggtacttttccagtgtcccacactcctgggttacaaccaaggttttctgag 255

                                                                       
Query: 365 tcatgatacaaggttctctctctccatagatccaactactgttatcattttttcttctcc 424
           |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| 
Sbjct: 254 tcatgatacaaggttctctctctccatagatccaacgactgttaccattttttcttctct 195

                                                            
Query: 425 tctccttcctctttccatgcctgccttccttccttcctttcttttttct 473
           |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 194 tctccttcctctttccatgcctgcctgccttccttcctttcttttttct 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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