BAC Information

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BAC

Clone NameMSMg01-394O21
Chromosome10 (Build37)
Map Location 25,574,311 - 25,574,766
singlet/doubletsinglet
Overlap genenone
Upstream geneCrsp3, Arg1, EG667479, LOC212399, Akap7, LOC665800, Epb4.1l2, 2010003K15Rik, EG667513, LOC667519, LOC628697
Downstream geneC030003D03Rik, LOC100040851, LOC15352, Samd3, L3mbtl3, LOC435208, LOC667572, LOC100040349, Arhgap18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394O21.T7 (MSMg01no394_o21.b1)MSMg01-394O21.TJ (MSMg01no394_o21.g1)
ACCAG495870AG495871
length774768
length of high quality
(start - end)
407 (55 - 461)456 (84 - 539)
definitionCHROMAT_FILE: MSMg01no394_o21.b1 PHD_FILE: MSMg01no394_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:30 2005CHROMAT_FILE: MSMg01no394_o21.g1 PHD_FILE: MSMg01no394_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTGTNTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCTGTTTAGCTCTGCTCCCCATTTTTAATAGGGTTA
TTTGGTTCTCTGGTGTCTAATTTCATAAGTTCTTTGTATAGATTGGATAT
TAGCCCTCTATTGGATGCAATTTGTTTTGCAATGTGTTAGTGGTCATTTT
CTCCTATTACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTATGAGG
TCTCATTTCTCTACTTTTGATTTTAGAGCATAAGCCATTGGTGTCTTGTT
CAAGAACTTTTCCCTTATATTCATGTGTTCAAAGATTTCTACCACTTTCT
CTTCTGTTAGATTCAGTGTATCTGGTTTTATGTGGAGGTCCTTGATCCAC
TTGGACTTGAGCTTTGTACAAGGAGATAAGAATGAGTCAATTTGCATTCT
TCTACTTGTTGCCCACCAGTTGAATCAGGACCATTTTGTTGAAAAGTTGT
CTTTTTTTTCACTGGATGGTTTTAGTTTTTTTGTCCAAGACCAAATGGCC
ATAGGTGTGTTGGTTCCATTTTTGGCGGCTCAATTTATTACCTTGGACCT
ACTGCCTGGTTAACACCAAAACCATGGGGTTTTTTATTTCCATTTCTTTT
TGATAACACCCTGGGTGCACCGAATGCTTAATTTCCCTTCCACACTCTTT
TTTTCTTTCGTATAGCAGCTTTTTCCTACTCTTGGTGCCTTTCTTTTTTT
CCAAATAAACTTTAATACATCTTT
NNTTTTACCGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAATGAATGAACTTG
TGGTTTTGTGTTTCATTCTACTAAAACAGCAGTCCTCAAACTGTGGATCA
TAACCATCAGAAAATACATATTTCCAGCTATAAATTTATTTTTGTTGCTA
TTTCTTACCTATAATTTTGCTACTGAGCAGTAATCTCAGTTCCTAAGACC
ATTAGAAATGAGTTTTCCAATGATCATGACCTACAGGTTGAGAAACACTG
AACTAAAGCAACTTGAAATTTTGGAAGTGAATAATGCTAATAAATAATAT
ATATTGAGTGCTTTCTGTCTATGGACACTAGATTATGTTTCAAGTTATCT
CATGTAACTTTCATCTCCGGTCTTACAAAGTAGCTTATCTTCATTTTCTG
TAGGGCATTCTGTANAATGAATGTCAAGGTTGATTTGAACCCAGGTCTTT
CCAATTCTAAAGCTTAAACATGTTCCCTCATGCTTTGGAACAGCTGAGGC
CAGAGAATCAGGCACACCCTTGGTTATGCACTGTCTCCTACCTCCACATA
TCTTCTTCTTGAGAGCTTCAGAAAACCTGTTCTGCTAACTGCTAATGATC
TTCCCTGCAGACTGTACTTCCCCTTACGTCTCCAAAAAAAATTTCCCACC
CCTGGGTCCTGGGGGTGGTTTGTTAAAAACCAAAAACCCTTGGACCTTGG
TTCAAAAATGTCGGCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_o21.g1 MSMg01no394_o21.g1 CHROMAT_FILE:
MSMg01no394_o21.g1 PHD_FILE: MSMg01no394_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:30 2005
         (456 letters)



>mm_chr10_25574111_25574966
          Length = 856

 Score =  861 bits (445), Expect = 0.0
 Identities = 453/456 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaatgaatgaacttgtggttttgtgtttcattctactaaaacagcagtcctcaaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaatgaatgaacttgtggttttgtgtttcattctactaaaacagcagtcctcaaactg 260

                                                                       
Query: 61  tggatcataaccatcagaaaatacatatttccagctataaatttatttttgttgctattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggatcataaccatcagaaaatacatatttccagctataaatttatttttgttgctattt 320

                                                                       
Query: 121 cttacctataattttgctactgagcagtaatctcagttcctaagaccattagaaatgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 cttacctataattttgctactgagcagtaatctcagttcctaagaccattagaaatgtgt 380

                                                                       
Query: 181 tttccaatgatcatgacctacaggttgagaaacactgaactaaagcaacttgaaattttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttccaatgatcatgacctacaggttgagaaacactgaactaaagcaacttgaaattttg 440

                                                                       
Query: 241 gaagtgaataatgctaataaataatatatattgagtgctttctgtctatggacactagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagtgaataatgctaataaataatatatattgagtgctttctgtctatggacactagat 500

                                                                       
Query: 301 tatgtttcaagttatctcatgtaactttcatctccggtcttacaaagtagcttatcttca 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 tatgtttcaagttatctcatgtaactttcatctccggtcttataaagtagcttatcttca 560

                                                                       
Query: 361 ttttctgtagggcattctgtanaatgaatgtcaaggttgatttgaacccaggtctttcca 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttctgtagggcattctgtaaaatgaatgtcaaggttgatttgaacccaggtctttcca 620

                                               
Query: 421 attctaaagcttaaacatgttccctcatgctttgga 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 621 attctaaagcttaaacatgttccctcatgctttgga 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)