BAC Information

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BAC

Clone NameMSMg01-395M13
Chromosome10 (Build37)
Map Location 71,120,140 - 71,120,305
singlet/doubletsinglet
Overlap genenone
Upstream geneBicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860, LOC216081
Downstream geneEG216082, LOC622812, EG327767, 1700049L16Rik, LOC100040505, Zwint
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395M13.T7 (MSMg01no395_m13.b1)MSMg01-395M13.TJ (MSMg01no395_m13.g1)
ACCAG496516AG496517
length829779
length of high quality
(start - end)
---167 (150 - 316)
definitionCHROMAT_FILE: MSMg01no395_m13.b1 PHD_FILE: MSMg01no395_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:44 2005CHROMAT_FILE: MSMg01no395_m13.g1 PHD_FILE: MSMg01no395_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTCTCGCGGCGCTATACGACTCCTATTCTTAAAGGATCCGCGGGAAT
CCCTTCTTTCCGCCCCTCTACCATCATCATGAGATATGCTTTTTAATTCC
AGGTCTACCCTTTTCAGGTGCGCTTAGGTTGTCCTGGGATTGGGTCGAAG
TGGGGCGTTCCTGGGTTCTGGAGGAGGGTGAGTGGGTCCTGGTCTTCTGG
TTAGTACGGATTCTTTACGTTCTACCCTTTCCGCCATCTTGGCATTCTCT
TGGAAGTTAGCTGGTTATAGTTTGTTCTTTGTTAAAAAGATTGTTCCCTC
TCGTTGATTTTTCGTTACTCCTCTATCAGCACGGCGCCGGGAGATTATTC
TTCTCTTCTCTGAGTTTCAGTCGGTCAGAGCATGTCTCTGTAGGTTAGCC
TCTCCTCTCTCAGGGAAGGTGTACACGTTATCTGCGTGTTTGTACCTCCT
CCTGTTCTGACGGTGTTTTCCCTCTACTGGTCTTTTCCCTGAATTTGTGC
TGTTTCTGTCCACCCAGGTGGCCATTCGTCTGGATTCTAATATTTTTTAG
CTCTTCTATCTTCTGTTCCTCTTGCCCTGAACTTTTCTTTTTCGCCCGCT
ACCCTCTATTCTCCCCCCTCCCATTTTCCGCCCCTTTTTTTTTTTTTCTC
TTCACCCCTCCCCTTCCTTCGCCCTTTCTTCCCCCCACTCCCTTTTTTTT
TCCCCCTCTCGATTTTCCTCCTTTATTTTTTCACCATCCTCTTCCTCTTT
CTTTATGTCTTATTCTTCCCCCGCCCCTTTTTTTTAGCCCTTTTCGTGTT
ACTCCCCGCCCTCCTTTCTCTTCCTTTTC
NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CAAAATTAACCTTGCTTTACTAGAAATGAGATTTGCGGTTATCAAATGAA
CGTGGATGATAGGCACTCACATCAAAAGGACACGAGAGTAATAATCTTTC
TGCTATGAGGTGAACTGATGGAAATACAGTCACCAAACTTAACTACATGA
ACTGTGTGGGAAATGTACTCCATCTAAAGAATAGTAATAATCACTGGGAT
GTGGAACAATGCCCTGCGATGAGTGGATATTTGATCAACCCCTTAGCTTC
TAGCACTGTGCTACGCAATACTTTACAGATGGACTGAGCCCGCTAGTCAA
AAGTCACATATTTGTCCAATAAAATGCTAACATTATATTCACGTCCAAAT
AACTGTCGTGTGAAACTGTCATCATTTATCCACTACAATTTTATCACAGG
GCTTGCTCAAACGCTCTATGGCCGATATATCTACTACATTTCCTCTAGCC
TACGTTTCTCATTAATAAAACTTCCGAGACCTCCCTAAAGGTGAATTATT
TTTTTTTTTTCCCTTGGCCCTCCGACCCAAAAAAGCTTTCCCCCCCCCTA
TTCCGGATCTCTGAACCCCCTTAACATTCCTTTCCCCTTTCCTTTTGCCC
TTTGTTTCATTGTTCCCTTACCCCCATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_m13.g1 MSMg01no395_m13.g1 CHROMAT_FILE:
MSMg01no395_m13.g1 PHD_FILE: MSMg01no395_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:44 2005
         (167 letters)



>mm_chr10_71119940_71120506
          Length = 567

 Score =  275 bits (142), Expect = 1e-78
 Identities = 160/166 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaaaattaaccttgctttactagaaatgagatttgcggttatcaaatgaacgtggatga 60
           |||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gcaaaattaatcttgatttagtagaaatgagatttgcggttatcaaatgaacgtggatga 307

                                                                       
Query: 61  taggcactcacatcaaaaggacacgagagtaataatctttctgctatgaggtgaactgat 120
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 306 taggcactcacatcaaaaggacacgagagtaataatctccctgctatgaggtgaactgat 247

                                                         
Query: 121 ggaaatacagtcaccaaacttaactacatgaactgtgtgggaaatg 166
           ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 246 ggaaatacagtcaccgaacttaactacatgaactgtgtgggaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)