BAC Information

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BAC

Clone NameMSMg01-396K23
Chromosome10 (Build37)
Map Location 13,183,160 - 13,183,619
singlet/doubletsinglet
Overlap genenone
Upstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475
Downstream geneFuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2, Gpr126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396K23.T7 (MSMg01no396_k23.b1)MSMg01-396K23.TJ (MSMg01no396_k23.g1)
ACCAG497202AG497203
length1,126760
length of high quality
(start - end)		---460 (64 - 523)
definitionCHROMAT_FILE: MSMg01no396_k23.b1 PHD_FILE: MSMg01no396_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:52 2005CHROMAT_FILE: MSMg01no396_k23.g1 PHD_FILE: MSMg01no396_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAGAGTAGAGGGTCTGAGTGGTTTGTGTGAGAAGGCCGGGGGAGGGTAG
GGTAAAACAACGACGTGTTTCTACCACACGATTTATATCTACCGCCGCAC
CGCGGCGCGCCCAGTGTNTTTTGATAATAAGTAAAGAGAGGGATCGATGT
TACAAAATTTAATATTATTCTTACCCCCACACTACTGCTGTTAGAAAGAA
CGCCCGCGGCCATTATGCCCCGCGTGAGACACCCGTTTTGCACGCCTTCG
CGCGTTCTGCTAGTGTTGGGGTGGTGGCGCGTTATTATTTTTGCCGCCCT
TTTGGCCGGCCGGCCGTATGTGTTGATCCGCGCGGAGTGGGTAGCGTGAC
GCGTACCGCCATATAAAACAAGACCGGCCCGGACNGTGGAGAGGGTGGGA
GGTTATTAAAGGGCTTGGTCCGCGTGGCCGACGCGTAAGCGAGCTCCCGA
GACCCGCAAAATATCGCGGTCATCGTGACGATGTAATTAAACGTCGCGTT
CTCCATATGTCTCTAGCGGCGNTACCCTTAAAGATAATTCGCAGTAACAC
CGTTCGCAATATTTCGGAGCCCTGCGCCCAGTTATTATATTTGCGGTACG
AACTACGCGGTGCGCAAACGTATTTATTTTATATCTACCCTCGTCTTACC
CCCCCGCCTCTTATCCAAAATCACCTATTCCGGCCTTATTTGTTCATAAC
TAAATATAAAACCGGCCCCGAATGCCCCCGCGTATTTTGTGTTAACGCCG
CCGCGGTACGCGCCTTAAATTATATTCGCCCCCGCCGACGTACTTATCGT
TCCTATATACTTTTCCTCGCCTTTTCACCCCTCCCCACTTTTCCCGCTAG
CCGCGCCTTGACCCACTGTTGCGTTCACATTATAACTCCTTTGTTTTCCT
GTCGCCCGCCCCACCGTTTTCCGATGCATGCCCCGGTATTATCTGAGTAA
GCAAGTTGATACGTGGGTATCAGTATGAAGAGAGGACCCATGGGAAGCCC
GGGACGACATCGACTTACACGTGAGGGTGAGTACGGTTGGCGGGGCGTAT
AGCGTGCGACCGCGGTGGCCCGCTAATAGCTCGCCCTCCAGGTGCGTTTT
GTTGTGCTTTTTTCTTCCCCGCCCCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTCGATTTCCCAGTCCTTGGACATGAAACAGTAAAGA
TTTTTCATGTGCCTTCAACTCTCCCACCTCCCTTCAAGAACTGTCTTCTG
TATAACCACATGGACACATTACCTCTTGTGTCCCCATCCCAGCATATGTT
GAGACAAGAGAGCTGGGTTGGTTGGTTCTGGTGCTTTTAGAACTGGAATC
CAGTGAGTCTCACTGCTAGTTTGAAGACAGGTCAATTTAGGAGCATTGAT
AGTAACATGTGTATACAAAGGCAGAGAAATCTGGGAAGGATGTAGATGAA
TGGATAATACAGATAGTGTTAAAGAATAAAAGTCTATATCCACTTACAAT
GCAAATGTTGGAATTCTTCTCTCTAATTTAGAGGTATTTGAGAGGGAACT
GGGACTAGAGGAAGTGTGGTAATGAATGGAACTAACACCCATAGAGGAAA
TCTTATTTACTCTCTCTACCATGTGACAACACAGTAAGAAAGTAGGCATT
GATGAAATCAGAACATCCCCCTTACCAATAGAATTTGAAAGTGTTATGAT
AGACAACCTTGCCTCCTTTTTGGGTGGGGGCATGGACCGCTCCTATGAAG
GGGAGGGAAATGATCCAATTCCCCAAACAAAATGGGGGTCTTAAATACAG
GACGTTATTTCCCTCCCACCAAAAAATGGGCCCCCAAAATAAATTTGTTT
TGTGGTTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_k23.g1 MSMg01no396_k23.g1 CHROMAT_FILE:
MSMg01no396_k23.g1 PHD_FILE: MSMg01no396_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:52 2005
         (460 letters)



>mm_chr10_13182960_13183819
          Length = 860

 Score =  851 bits (440), Expect = 0.0
 Identities = 455/460 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcgatttcccagtccttggacatgaaacagtaaagatttttcatgtgccttcaactctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcgatttcccagtccttggacatgaaacagtaaagatttttcatgtgccttcaactctc 260

                                                                       
Query: 61  ccacctcccttcaagaactgtcttctgtataaccacatggacacattacctcttgtgtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacctcccttcaagaactgtcttctgtataaccacatggacacattacctcttgtgtcc 320

                                                                       
Query: 121 ccatcccagcatatgttgagacaagagagctgggttggttggttctggtgcttttagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatcccagcatatgttgagacaagagagctgggttggttggttctggtgcttttagaac 380

                                                                       
Query: 181 tggaatccagtgagtctcactgctagtttgaagacaggtcaatttaggagcattgatagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaatccagtgagtctcactgctagtttgaagacaggtcaatttaggagcattgatagt 440

                                                                       
Query: 241 aacatgtgtatacaaaggcagagaaatctgggaaggatgtagatgaatggataatacaga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 aacatgtgtatacaaaggcagagaaatctgggaaggatgtagatgaatggataatataga 500

                                                                       
Query: 301 tagtgttaaagaataaaagtctatatccacttacaatgcaaatgttggaattcttctctc 360
           ||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 tagtgttaaagaataattgtctatatccacttacaatgcaaatgttggaactcttctctc 560

                                                                       
Query: 361 taatttagaggtatttgagagggaactgggactagaggaagtgtggtaatgaatggaact 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatttggaggtatttgagagggaactgggactagaggaagtgtggtaatgaatggaact 620

                                                   
Query: 421 aacacccatagaggaaatcttatttactctctctaccatg 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacacccatagaggaaatcttatttactctctctaccatg 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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