BAC Information

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BAC

Clone NameMSMg01-396P11
Chromosome10 (Build37)
Map Location 26,005,772 - 26,006,007
singlet/doubletsinglet
Overlap geneL3mbtl3
Upstream geneAkap7, Epb4.1l2, 2010003K15Rik, EG667513, LOC667519, LOC628697, C030003D03Rik, LOC100040851, LOC15352, Samd3
Downstream geneLOC435208, LOC667572, LOC100040349, Arhgap18, Lama2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396P11.T7 (MSMg01no396_p11.b1)MSMg01-396P11.TJ (MSMg01no396_p11.g1)
ACCAG497416AG497417
length792762
length of high quality
(start - end)
236 (67 - 302)344 (64 - 407)
definitionCHROMAT_FILE: MSMg01no396_p11.b1 PHD_FILE: MSMg01no396_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:14 2005CHROMAT_FILE: MSMg01no396_p11.g1 PHD_FILE: MSMg01no396_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCGCTAAACGAGNCCTATTTTCAGACAACCGCGGAANNCNNGAACGTG
CAAACATACGCNGNAACAGGAAGAAACTTAACAGAGGTCCAGAAATTGGG
ATATAGGCATTCCTCACCTCTTAGAGGAGAGGAATACTGGTCCCCCAATT
AAGAAAAGAAATTTTAATAAAATGTAAGGTAATTAGGAACGTGAAGGCAG
AGACTTCCTTCCCAACGTTCTCAAGGAAGGCAGGTTGATATTAAGCATGT
GGCATGAAGCATACTCTTTACCATCCTGGAACAGGGGCATGCATTTGATT
TTGTTTTTTTTTGTGTAAGCATTAAAGAGTTTGGTTCTATTTATAGATTC
TTGCCGTTTGGGGAGACCTGGTTCTGTCCTTGCCCCTGTAAATGTACGCC
CCCCCCCTTACCGTATAAAATACCAGACCTAACCCCAGGAAGTGCTACAG
ACCATCTAAGCTTGCCAGCTACTCCGCTGGTGTTTGTCTCGCTACGCGTT
CCGCAGGATGTTGTCCTATCCCTCCCTCATGTCTGGATGTTTTTTCTTTT
CCTCTTTTGGTGAATTCCCCTGCCTTCTCCTTCTTTTCGCCCTTGCTTTG
CCTATTCTTTTTTACCTGTATTCGTTCCTAATCGACCGAGGCTCCTTTTT
TCTTCCTCTTTCCTTTCAAAGTACTCTCCTCGGCTGACTCTACGAGAATC
CTGTTTCTTTTGCCCTCTTTCTTCCGGCTCTTACCCGTGTTTACGTAATC
CCTCCACCATTCCGCTTCTCTATTAACCCCCCTATTACATCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCACCTGAGGAATACCGAAATGGCAGAGAAGCACCTG
AAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAGCAGATACTGGCTTGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCG
TTTCCTCTGATTTTTGGACATAGTACTACCGGAGGATCCAGCAATACCTC
TCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGC
TCCACCACGCTCATAGCAGCCTTATTTATAATACCCAGAAGCTGGAAAGA
ACCCAGATGCCCCTCAACAGAGGAATGTATACAGAATATGTGGCACATCT
ACCTAATGTAGTACTACTCAGCTTATAAATATAACGAATTTACGACATTC
CTAGCCTAATGGATGGATCTGCAGGGTTTCCTTCTGAGTGACGTTACACA
TCCTCTAAGTATCTCTTATTCCATGCTTTCTTTGAAAATTGGCAATTATC
TCCCCATTCTTGGCCTCCCCAGAAATTACATACCTTTTTTCAACTTTTTT
CATTTCTTACAAAAATGTCCATTTATCTTTTGTACCTATCTCCCTTCTTT
TATTTTTTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_p11.b1 MSMg01no396_p11.b1 CHROMAT_FILE:
MSMg01no396_p11.b1 PHD_FILE: MSMg01no396_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:14 2005
         (236 letters)



>mm_chr10_26005572_26006207
          Length = 636

 Score =  426 bits (220), Expect = e-124
 Identities = 232/236 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaagaaacttaacagaggtccagaaattgggatataggcattcctcacctcttagag 60
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 436 caggaagaaacttaacagaggtccagaaattgggatagagggattcctcacctcttagag 377

                                                                       
Query: 61  gagaggaatactggtcccccaattaagaaaagaaattttaataaaatgtaaggtaattag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gagaggaatactggtcccccaattaagaaaagaaattttaataaaatgtaaggtaattag 317

                                                                       
Query: 121 gaacgtgaaggcagagacttccttcccaacgttctcaaggaaggcaggttgatattaagc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 316 gaacgtgaaggcagagacttccttcccaacgttctcaaggaaggcaggttgagaataagc 257

                                                                   
Query: 181 atgtggcatgaagcatactctttaccatcctggaacaggggcatgcatttgatttt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atgtggcatgaagcatactctttaccatcctggaacaggggcatgcatttgatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)