BAC Information

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BAC

Clone NameMSMg01-397C20
Chromosome10 (Build37)
Map Location 31,984,462 - 31,984,660
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneHddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638
Downstream geneEG667761, Trdn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397C20.T7 (MSMg01no397_c20.b1)MSMg01-397C20.TJ (MSMg01no397_c20.g1)
ACCAG497578AG497579
length773789
length of high quality
(start - end)		200 (45 - 244)410 (67 - 476)
definitionCHROMAT_FILE: MSMg01no397_c20.b1 PHD_FILE: MSMg01no397_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:31 2005CHROMAT_FILE: MSMg01no397_c20.g1 PHD_FILE: MSMg01no397_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAAAAAGTCTTCACTTTAATATTATTGGTAACATCTAGTGTCTGG
ATACCAAGCGGGTTCTACTAGGTCTTTCATTGTCACCAAATACTAGTTAA
ATCAAGGAAGGAAGAAATGGAACAGTAAATAGATAAAGGTAATGATAAAT
ACCAAGAATAATTGCAAAAAATGATATCACAAAGTGCTTGTGCCAAAGAA
ACCAGCCTTGGGACCTCTCATGAGGTCATAGCCTCATGCTCTGTTACACA
GTACCCCCAGAGATTTTTCTTCCTTGTATCAGGGGGGCCAAGGAAACTCC
AGCTTATGAAGGGAATCTTCAAATTCCCTAACCCTGATTTCTTTCCAAAC
GGGTTTTTCCCCAAGTTGGGGTTTTGGGGAAAAAAAACGGAAACCTTTTT
TCCCAAACCCCAAATATTTAGGCCCCCGGCCGCACAAAAAAAAGGGGCGG
GGGAAATTTTTTCCCCCCCCCCCCCCTTCTGCGGGGGGGGGGACCACCCC
ACAAAATATTTTTTTTTTTTTGGGGGGGGGTGTTTTTTAAAAAAATATTT
TTCTCCCGNAAAAAAAAATTTCGTGTAAAAACATTTTTTTTCCCTCTTTC
TTTTTCCTTCCCAAAAATAAAATCATTTCTTTTGTTGGGGTGCGAAAAAA
AAGAAGAAAATATTTTTTTTTTTCCCCGCGGGGGGGGAAGAACAAATCCA
CTTTTTCGATTGAATAATTCTTG

GTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAGAGCTAATTTCCAAATAGCCAAACAATCCAAT
TAAATATGGGGTATAGAGCTAAACATAGAATTCACAACAGAGGAATCTCA
ATTGGCTGAGAAGCACTTAAAGTGCTTAAAGTTCAAAGTCCATAGTCACC
AGAGAAATGCAAATCAAAATGACCCTGAGATTCCACCTCACACCAGTCAG
AATGGCTAAGATCAAAAACTTAGGTGACAGCAAGGATATAGAGAAAGAGG
AACACTCTTCCATTGCTTGTGGGATGGCAAACTGGTATAACCATTCTGGA
ATCAATCTGGAGTTTCCTCAGAACATTGGAAATAGATCTACCTAAAGACC
CAGCTATACCACTCTTGGGCATATACCCAAAAAATGCTCCACCATACCAC
AGGGGCACATTGCTCCACTATGTTCATAGTGGCCTTATTTGTGATAGCCA
GAAGCTGTTAACAGCCCACTTGTCCAGGACAGAAGAATGATTCCGAAAAT
GTGGTTCATTTAACAATGGACTACTATTCCGCTATTACGAAAGGGGACCC
CTTGACTTTTGCGGGCCATGGTATAAAATAAAAAAAATAACCCGGATTAA
AAACTCAAACGCCTCGGAAAGGTTGGTTTGTTCCTCTTTTATGGGGTTTT
TTCCCATAAAGCTTAAAACCCCCGATATTCCCCTGAAATCCCCAGGTGTT
ACTTCTAAAGGCTCCGGCGTTGGTTTCCCTTCCTTTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_c20.b1 MSMg01no397_c20.b1 CHROMAT_FILE:
MSMg01no397_c20.b1 PHD_FILE: MSMg01no397_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:31 2005
         (200 letters)



>mm_chr10_31984258_31984860
          Length = 603

 Score =  337 bits (174), Expect = 4e-97
 Identities = 192/200 (96%), Gaps = 5/200 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaaaaagtcttcactttaatattattggtaacatctagtgtctggataccaag 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaattcacaaaaagccttcactttaatattattggtaacatctagtgtctggataccaag 344

                                                                       
Query: 65  cgggttctactaggtctttcattgtcaccaaatactagttaaatcaaggaaggaagaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cgggttctactaggtctttcattgtcaccaaatactagttaaatcaaggaaggaagaaat 284

                                                                       
Query: 125 ----ggaacagtaaatagataaaggtaatgataaataccaagaataattgcaaaaaatga 180
               |||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct: 283 agaaggaacagtaaatagataaaggtaatgataaatactaaggataattgcaaaaa-tga 225

                               
Query: 181 tatcacaaagtgcttgtgcc 200
           ||||||||||||||||||||
Sbjct: 224 tatcacaaagtgcttgtgcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 603
Length adjustment: 8
Effective length of query: 192
Effective length of database: 595
Effective search space:   114240
Effective search space used:   114240
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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