BAC Information

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BAC

Clone NameMSMg01-399A15
Chromosome10 (Build37)
Map Location 77,160,862 - 77,161,206
singlet/doubletsinglet
Overlap genenone
Upstream geneCol6a1, Pcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895
Downstream geneKrtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399A15.T7 (MSMg01no399_a15.b1)MSMg01-399A15.TJ (MSMg01no399_a15.g1)
ACCAG499001AG499002
length725764
length of high quality
(start - end)
349 (78 - 426)61 (100 - 160)
definitionCHROMAT_FILE: MSMg01no399_a15.b1 PHD_FILE: MSMg01no399_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:57 2005CHROMAT_FILE: MSMg01no399_a15.g1 PHD_FILE: MSMg01no399_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGCAGATCCG
CGGAATTCAGCTGCATTCTCACCCAGCCTAGAACCCTCAAGCTCTTCCCT
TACAGTCTTAACTCTGCTTCATGTTCAAAATGTTCCACAACCTTCCAAAA
TATAGCACCCCTAGATGAGGATGAAGAATTCAAACCATGAGCTAGTGAGA
AATATTGTGCATTCAAGCCATAACGCTGGATCTTCTCCAAGTTCTCAGAC
AGATCCTAGCTTGATCATCCAGGGTCCCAGGGTCACAATCAGAAGGCTCT
ACAACATCTTAAGCACAGCTCAGGTTCCTTAAGAAAGCCTCCTGCATCTG
AGAACACAGCCAAGCTCGCAACAACCTCCTTCCCTGTTCTGCCTGTCTGT
CAACCTGGGCCCTCTTGCTGTACGCAGAAGTATTCAATTCTGCAGAGTAA
ATTCCCGGATCTTCTGCCTGCCACATCTGCTACACAGTTCCAGCCCCCTA
GTGACCGTTCGTTGTCCTGCCCTATCAAGTTCTATCAGATTTTTTCCCTT
TAGACGCCTAGAATTCTATGGATGATGCTAAAAGTCATCTCTCCTCTGAG
TGATGGCAGATCTGACTTATCTCCATTCCTCTGGAGTTGACTTACCATTA
CACTCCTTTCTAGTCTGTTACATCTTGACATAACAACGACTGGAACCCAC
GACCTGATTATCCTCATCCTATGCT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAACCTAGGTCTCAGCATG
TTCTAGGTGAAGAAAAGTTTAAGTCCAGGCATGGTGGTACACATCTTTAA
TCCCAGGAGATAGGCATGCAGATTTCTGAGCTCAAGGTCAATATACAGAG
TAAGGTTCATGACAGCCAAGTTTAGGCAATATGGAGTTGGAAAACTGATA
GCTAGTGATAATAACAAGAGGGCCATGTTCCAGTCCCAGCAAGGAACAGA
ATCTGGTATATTCAGCCATGTGCCCTCTGGTTTTACATTTTAGACTAGCA
GGTACAACTGATATTACTGATGCTGCCGATCTGTACCTGTGTAAAGTTTG
CAGTGATTACCACCAGCTTCTCTGCACTGATCCTTTCCGTTACCCGTCTT
TCTTGTTTGCTCTACCTAGATATGTCTGAGAGATAATCACCGTTGTACCT
GTCGTTGCAGCTGAACTTGTCTTCGCTGCCCGATTCCCCTTATGTCGGTA
CTGCCCTCCGAACGTATGTCCGTTTTGCACCAGTAGCCTGATTTTTTGAC
ACCCGTTTTATTTTTTTACATTCCCCTATCAATGTATTGAGCTATAACTC
CCTCTGTACCCTTTTTGCCCTCCCTTATTTGACCCACCTTTATTTTTTAT
TATTTTTTTTTCGCTTTGCGCCCTCCCACTCTTTTCCCCTTTTTTTTCAC
CCCCTCCCCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_a15.b1 MSMg01no399_a15.b1 CHROMAT_FILE:
MSMg01no399_a15.b1 PHD_FILE: MSMg01no399_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:57 2005
         (349 letters)



>mm_chr10_77160515_77161263
          Length = 749

 Score =  636 bits (329), Expect = 0.0
 Identities = 341/345 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagaaccctcaagctcttcccttacagtcttaactctgcttcatgttcaaaatgttcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ctagaaccctcaagctcttcccttacagtcttaactctgcttcatgttcaaaatgttcca 633

                                                                       
Query: 61  caaccttccaaaatatagcacccctagatgaggatgaagaattcaaaccatgagctagtg 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 caaccttccaaaatataacacccctagatgaggatgaagaattcaaaccatgagctagtg 573

                                                                       
Query: 121 agaaatattgtgcattcaagccataacgctggatcttctccaagttctcagacagatcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 agaaatattgtgcattcaagccataacgctggatcttctccaagttctcagacagatcct 513

                                                                       
Query: 181 agcttgatcatccagggtcccagggtcacaatcagaaggctctacaacatcttaagcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 agcttgatcatccagggtcccagggtcacaatcagaaggctctacaacatcttaagcaca 453

                                                                       
Query: 241 gctcaggttccttaagaaagcctcctgcatctgagaacacagccaagctcgcaacaacct 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gctcaggttccaaaagaaagcctcctgcatctgagaacacagccaagctcgcaacaacct 393

                                                        
Query: 301 ccttccctgttctgcctgtctgtcaacctgggccctcttgctgta 345
           |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 392 ccttccctgttctgcctgtctgtcaacctgggtcctcttgctgta 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)