BAC Information

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BAC

Clone NameMSMg01-401I18
Chromosome10 (Build37)
Map Location 100,599,567 - 100,600,055
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401I18.T7 (MSMg01no401_i18.b1)MSMg01-401I18.TJ (MSMg01no401_i18.g1)
ACCAG500906AG500907
length750757
length of high quality
(start - end)
257 (329 - 585)489 (78 - 566)
definitionCHROMAT_FILE: MSMg01no401_i18.b1 PHD_FILE: MSMg01no401_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:12 2005CHROMAT_FILE: MSMg01no401_i18.g1 PHD_FILE: MSMg01no401_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGC
GGAATTCACGCAGTTGCATCCTTCTCAACAGTCTGTTTTACGGGAACACT
TCATTACCATGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTTCTTGC
GCCGGTGATGGTAACCGTCCTGGGTTTTCTCATCTCAGGATTTCTCGTCT
CGGGTTTTCTCGTCCCGGGTTTCGGCACCAACTCTTACCTGCGTTCTCGA
CCTTTCAGGAAAGAATGCAGCAAACCGGAATCTTCTGCGGCAAAAGCTTT
ATTGCTTACATCTTCAGGATTAATAGTGCAAGAGAGCAAGAGCTCTATTG
CTTACATCTTTAGGAGCCAGAGCGCAAGAGCGCAAGAGTGCAAGAGCAAA
AGCAAGAGTACAAAAAGGGGAGAATGGCGAAACCCCGTCCCTTTTTAAGG
AGAATTATTCTCCGCCTAGGACGTATTACTCCCTGATTGGCTGCAGCCCA
TCGGCCGAGTTGTCGTCACGGGGAATGCAGAGCACATGTAGTGGAAAACT
ACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATG
TCAGCGCCATCTTGTAACGGCGAATGTGAGGACGGCTCCCCACAAAATAT
TTCTTGAAAGTGTATTTAGCTAACCTCCTCTGTATGTTGACCCCCATTTA
AATTGAAATATTTCAAAATTCCCGTTTTTTATTTGCTCCCTTTTCTTTAN

NNCCGATGATANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTCTCAAGTTCTCCTACTT
TTATGTGTTTTTTTCTGTGAGATGATGAGTTTAATTTTGGTGGCATTCAT
GAACATGAATTTGGGTTGGTATTTACAGAAACTGCAGATGTACATGAAGA
AATGCTATCCTCCCCAGACCTCTACTTATGTTCATAATAAAAATTTATAG
ATAAGCAAGATCAGAAGAGAATGATCAATGTCTTAATATAATTGACCAGG
GTTGAAAATATTGATAAGCCTTTGATATTCATTAAATGCATAAATAGTTA
AAATGTAGAAACTGTAGATAATAAGACTATTTGTACATACTTGCCTATAT
CTGTGTTGTATCTACAAATATTTACTTACTTTTATCAATTGAGATCGTCT
AAAGGGAATGAAACATCAGAGTTAATCACCACTGCTGGTATAGAGAGCTT
GGTTTCTCTCAGGAGAGTTTAACACCAACTTTTTTTTTTTGATATTTGCT
TGTATACTTCATGGATTTTATACATGTTTGAATCATGGATATGAAGGCCC
AATCGTAAGTGGTGTTGGTTTGCTACCCAAAAGAAAACTAACGCATTCCT
GAGTCTATCTTATTATAAAAATTTATGAAAATTATTAAGTACCGAATGGA
CCCTGCTTCCGCGCTGAAAAATTTCAAAAAATAACTGGGGCTATGAACCT
CTGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_i18.g1 MSMg01no401_i18.g1 CHROMAT_FILE:
MSMg01no401_i18.g1 PHD_FILE: MSMg01no401_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:12 2005
         (489 letters)



>mm_chr10_100599367_100600255
          Length = 889

 Score =  938 bits (485), Expect = 0.0
 Identities = 488/489 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcttctcaagttctcctacttttatgtgtttttttctgtgagatgatgagtttaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcttctcaagttctcctacttttatgtgtttttttctgtgagatgatgagtttaattt 260

                                                                       
Query: 61  tggtggcattcatgaacatgaatttgggttggtatttacagaaactgcagatgtacatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtggcattcatgaacatgaatttgggttggtatttacagaaactgcagatgtacatga 320

                                                                       
Query: 121 agaaatgctatcctccccagacctctacttatgttcataataaaaatttatagataagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaatgctatcctccccagacctctacttatgttcataataaaaatttatagataagca 380

                                                                       
Query: 181 agatcagaagagaatgatcaatgtcttaatataattgaccagggttgaaaatattgataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatcagaagagaatgatcaatgtcttaatataattgaccagggttgaaaatattgataa 440

                                                                       
Query: 241 gcctttgatattcattaaatgcataaatagttaaaatgtagaaactgtagataataagac 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctttgagattcattaaatgcataaatagttaaaatgtagaaactgtagataataagac 500

                                                                       
Query: 301 tatttgtacatacttgcctatatctgtgttgtatctacaaatatttacttacttttatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatttgtacatacttgcctatatctgtgttgtatctacaaatatttacttacttttatca 560

                                                                       
Query: 361 attgagatcgtctaaagggaatgaaacatcagagttaatcaccactgctggtatagagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgagatcgtctaaagggaatgaaacatcagagttaatcaccactgctggtatagagag 620

                                                                       
Query: 421 cttggtttctctcaggagagtttaacaccaactttttttttttgatatttgcttgtatac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttggtttctctcaggagagtttaacaccaactttttttttttgatatttgcttgtatac 680

                    
Query: 481 ttcatggat 489
           |||||||||
Sbjct: 681 ttcatggat 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)