BAC Information

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BAC

Clone NameMSMg01-401L12
Chromosome10 (Build37)
Map Location 59,623,883 - 59,624,019
singlet/doubletsinglet
Overlap genenone
Upstream geneSept10, Ankrd57, LOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225, Cbara1, EG664907, LOC664936, Dnajb12, Ddit4, D10Ertd641e, Ascc1, Spock2
Downstream geneChst3, LOC100039080, Psap, Cdh23, 4632428N05Rik, Slc29a3, Unc5b, Pcbd1, Sgpl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401L12.T7 (MSMg01no401_l12.b1)MSMg01-401L12.TJ (MSMg01no401_l12.g1)
ACCAG501036AG501037
length830739
length of high quality
(start - end)
148 (81 - 228)211 (366 - 576)
definitionCHROMAT_FILE: MSMg01no401_l12.b1 PHD_FILE: MSMg01no401_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:24 2005CHROMAT_FILE: MSMg01no401_l12.g1 PHD_FILE: MSMg01no401_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGGTCCAAAAACAGGGGAAGGAAAAAGAANACTATTCATCATCGGGGGNG
GNAATCCCACTTATCAGAAACGAGGGAGGNTGGAAGACCTCACAGCATCC
GAGTCTACTTGAACTCGTCATGGGGCCAAAGCAGAACTCCTGGAAAAGGT
TTCTTAGAATCTTGAGGCCCAGTGGCCCTTGATGTCACCTAAATCCTCTG
GGGCCCAAGTGGTAGTTGGGGGGGGGGGTCCTCTGCAACCTTCTTACTTT
TTTTTTTCCGGAGCTGTGATGAAATACCCTGATCTAAGCAATTTATGCCG
AGAGAGCACCGGGGATTTTCGTCNTTTCCCACCGGACCACAACACCTCCC
AGGGATCATTTTTTCTCCCCCCCACCTCCTTTATTTTTTCCTTCTACTTA
TTTTCCCTGACGAATACCTCTCCTACATTTTGACTGGTTGTGCCCTGTTT
CTATTCCCTTTATTCCTCTTTCTCTATTTTCTGTTATTTATCTTCTCTAC
TCTTCCTTTTCTTTTTCTTCCCCCCCTTTTTCTTTCTTATCGTACTTCTC
TTACCGCGTTCCTCCTTTCTTCTCTCCTTTTCTCCTCTTTTTTTCCTTTT
CTCTCTCCCTTTGCTGCTTCTTTATCTTTCCCCTATCATCCCCCTCATCA
TATGTTCCCCCCTTTGTTCTTGTCCTTTGCTCTCCCTTGGTCGTTACCCT
TCCCCCTTTTTCTTTTTTCTTTTGCCGGCGACAGACTACATTTTCCTTCT
CCTCATTGCTGTTTTCATTCCTTCCTCTCTCCCTTCCCCCCCTTTATTTT
TTCCCCTTTCTCCCTCTGGTTTCTTCTTTN
TTCCCGATGATATGNGTAGCCTGGGGGNCGCCTGTTCAAAAATTTAGGTG
ACCTATAGAATTTCCGCAACAATCTTGACGNACCAGGGGACCATACGCCT
AAGAAAACTAAGGCTTTCTCCCCTGGCAGCTAATGACTGTGAATAGCTCC
TTAGCTTCCTCTGTGCTGGCATGCTCCCTGCCTTCATCTTGTGCAAGCGA
CCACAGCTGCTGTGAGCTAACGAGTGCATTAAAGATGCTGTTTGCCTCTG
GTCCCGTCTCTTTAAAGATTTAGCATCTATTTAAAATTTATGTGTACAAA
AATATTTTGCCTGTATGNATGGTACTGTGTATGCAGGGCCTGTGGAGGCC
AGAGAGGTGTGTGGCTCCCCTGGAACTGGGGTCATTGGACACTGTGAGCC
ACTGTGTGGGTCTGGGGAACTGAACCTGAGTCCTGCAAGAATAGCCAGTG
CTCTTAACTGCTCAACCATCTTTCCAGCCCCTGAACCTTGGCCCTTTGAA
TCTTTCCCCTCTTCTTTTTCTTTTTGTTTTTCTGAACCTTGAGAGATTTT
TTTTTTAATATGGATGGTCTACTTCTTNAAAGTTCAGAATTTTAAAAAAA
TCTCTACTTTGTTTGCCATGATGGAAGGATTAAAAATTAAAATTATACCT
TAGATGTACCTTACAGTGAAAATAGCTTTGGAGGTGTACATCTGTATGGA
ATCTAACAGATACTTAGGTCTGTGACTGTCCCCACTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_l12.b1 MSMg01no401_l12.b1 CHROMAT_FILE:
MSMg01no401_l12.b1 PHD_FILE: MSMg01no401_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:24 2005
         (148 letters)



>mm_chr10_59623683_59624230
          Length = 548

 Score =  265 bits (137), Expect = 8e-76
 Identities = 137/137 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaagacctcacagcatccgagtctacttgaactcgtcatggggccaaagcagaactcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tggaagacctcacagcatccgagtctacttgaactcgtcatggggccaaagcagaactcc 278

                                                                       
Query: 61  tggaaaaggtttcttagaatcttgaggcccagtggcccttgatgtcacctaaatcctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tggaaaaggtttcttagaatcttgaggcccagtggcccttgatgtcacctaaatcctctg 218

                            
Query: 121 gggcccaagtggtagtt 137
           |||||||||||||||||
Sbjct: 217 gggcccaagtggtagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space:    75600
Effective search space used:    75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)