BAC Information

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BAC

Clone NameMSMg01-403C01
Chromosome10 (Build37)
Map Location 94,110,264 - 94,110,546
singlet/doubletsinglet
Overlap genenone
Upstream geneNtn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3
Downstream geneEG667315, 4921537D05Rik, Plxnc1, Cradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403C01.T7 (MSMg01no403_c01.b1)MSMg01-403C01.TJ (MSMg01no403_c01.g1)
ACCAG502112AG502113
length764763
length of high quality
(start - end)
251 (61 - 311)283 (74 - 356)
definitionCHROMAT_FILE: MSMg01no403_c01.b1 PHD_FILE: MSMg01no403_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:18 2005CHROMAT_FILE: MSMg01no403_c01.g1 PHD_FILE: MSMg01no403_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGT
GTTACTTTTGAATCCTCTTCTCCCAGGGAATGACACAGCCAGAGATGTTT
CACCAGAGTCAAGCGCCCAGTCATAACTATCCCAGTTTCTTAAGAAATAA
ATCTTTATATTTTTTATAAATATATGAGTCTGGGTCTTCTGCCAAAGCTG
CACAGATCCTTGGAAGAGGGGGAGCACATGCCCCAGCATAAGCAATGAAC
ACATACACAAACATACAAAGAACACACACACAAACATACAATGAACACAT
ACACACAAATATTTTTTGAACACACACACAAACATACAAAGAACACATAC
ACAAACATACAACAAACACATACACAAACATATAAAGAACACATACACAA
ACATACAAAGAACACATACACAAACATACAACGAACATATATACAAACAC
ACAAAGAACACATACACAAACATACTACGAACACATACACACCCCTGACA
TTTTCTCCAGAACACACTTGGGCTAAGATGACTCCAGTTTCCCTCCTATT
CAAAATGGCCTGTCAAAGTGCAACTAACACCAGTTAAGAGATCTAGCGAT
TTGGTTGACAAGACAGTTTGCTTGCAATCCTAACCCTTGGGAGGTGGATG
CCCAAGGATGAGATACTTGGAGCCATCCTTGCCCCCCAAATCGAGATTCC
GAGGCCACCTTGCCCTATTTGACACCCTGTGGAAGACGGATACCGAACCG
GGATAAGGATATCC
CCTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCATGTTCAAGCTCCACCTATTATAGT
TCCCATCATGATAGGGAAGGCTTGGTTGGAGGTGGAACACTTCCTAGGAC
ACATCATTTCTCAGAATACCCATCTCAGAACCCCAGCCATGAGACACTGC
AGTCCCCATTCAGGCTGTACCTTTTCTCCATATCTAAGCTTCTCTGACAA
TATCATTACAAACACATCCAAAGAGTATCCCATGAAAATCCCAGATGTTT
AGTTTTTGTTTGTTTTGTGTGGTTTTATTGCTGTTTGCTCGGTTGCTTTT
TGAAACAATACCTCCCTATTTTTTTCCGGGGTGGCCTGTAACACATATCT
ACATTATGCAAACCTGAAAATCCAGCAAAGATTCCTCTTGCTTCGTTTCT
GCAGGATGTAAAGATGTGTACTGCCACACTTGTCGCCCGACCCGTTTCTT
CCCCCCCCAAAGTTTACCCTTGACTTCGGTGTGCACCTCTTGCACGGCTA
GTTGTGTCCAACTTGATTGATCGTTTCTAGTACGATTTTGGATTTCCGCG
CCCTAGCACTTTATTTTTCGAATTCTCCTGAGTCTCCATTTATCTATATC
TTTGCGCACACCCTCTTTCCTTTTTATATATAGTTTGTCCGCCTACCACC
CGCGGGTGCCGGATATTCCCCCAATATTTCCCCCCTTTCACCTGCGTTTT
CATCACCTACCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_c01.g1 MSMg01no403_c01.g1 CHROMAT_FILE:
MSMg01no403_c01.g1 PHD_FILE: MSMg01no403_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:18 2005
         (283 letters)



>mm_chr10_94110064_94110746
          Length = 683

 Score =  466 bits (241), Expect = e-136
 Identities = 274/285 (96%), Gaps = 4/285 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatgttcaagctccacctattatagttcccatcatgatagggaaggcttggttggaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ccatgttcaagctccacctattatagttcccatcatgatagggaaggcttggttggaagt 260

                                                                       
Query: 61  ggaacacttcctaggacacatcatttctcagaatacccatctcagaaccccagccatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ggaacacttcctaggacacatcatttctcagaatacccatctcaggaccccagccatgag 320

                                                                       
Query: 121 acactgcagtccccattcaggctgtaccttttctccatatctaagcttctctgacaatat 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acactgcggtccccattcaggctgtaccttttctccatatctaagcttctctgacaatat 380

                                                                       
Query: 181 cattacaaacacatccaaagagtatcccatgaaaatcccagatgttt-agtttttgtttg 239
           |||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||
Sbjct: 381 cattacaaacacatccaaagagtatctcatgaatatcccagatgttttagtttttgtttg 440

                                                        
Query: 240 ttttgtgtggttttattgctgtttgctcggtt-gctttttgaaac 283
           ||||||| |||||||||| |||||||| |||| | ||||||||||
Sbjct: 441 ttttgtggggttttattgttgtttgct-ggtttg-tttttgaaac 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)