BAC Information

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BAC

Clone NameMSMg01-403D05
Chromosome10 (Build37)
Map Location 31,786,711 - 31,787,157
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneLOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638
Downstream geneEG667761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403D05.T7 (MSMg01no403_d05.b1)MSMg01-403D05.TJ (MSMg01no403_d05.g1)
ACCAG502167AG502168
length757738
length of high quality
(start - end)
508 (65 - 572)424 (73 - 496)
definitionCHROMAT_FILE: MSMg01no403_d05.b1 PHD_FILE: MSMg01no403_d05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:24 2005CHROMAT_FILE: MSMg01no403_d05.g1 PHD_FILE: MSMg01no403_d05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACACCACTTACACTAAGCACTTTGAACAGTTAAGAGATTTCACCAC
TCACCAGTGCACATTTCAAAAAAGTTTTTCTGACCAAGGTAAATAGCAGC
ACTGATCTATAGGTATAAGCATAAATATTTAGAAGAACCATAGCAAAATA
ACAAGCTCAGGACTTATGACTTCAGACTTTGGACTTCTCCATGGTCTTTT
GAACAGCCACAAATTTATTCCAGTAGAAGAGGCTTGAGGGACAATCAGAA
ATCCATTGTATTCTTGCCTTTATTGCACCAGTGAGCATATCTTCCCTAGA
AAGTCAATACTATAATGTGCAGGGTTCTGTGGTGGATAAGATCATTGATG
TGTTTTCTCTCATAGTGGTCTGCATAGTTTCTCCAGGCACTGTAATAAAT
TGTAAGCATGTAGGCATTTGCTAGTCAAGCAAGGTTGATTCTTTCATGTC
ATGTGACCTCAGTGTTTTGTATCTAGTGATAGGATCTGGACACCAAGTTT
TGGTGGTCAACCAAGGGCAATAACAATAGCCTGTGTCATTTTGGAGATCT
CTGGGTCTCCAATAACTCAGAGAAAAATACTCCATGTTGGCACCGAAATT
TTTATTTATTAACCTACGCCACATTGGAATAACACTGATCATCCTGGCAA
GTAATTTCCTTGAAACATCTTTTCCTGCCGCAGACGTAGGTTACATTGGA
TCCTGGA
ATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTCCCTAGCTGAGAAATTATTTGTAAC
TCATGGTTCCTGAAAAGTGGAAATCAGTTTTCCTTGATCTGTGGTTCCTG
AGAGGCTATCCAAGCCTTAGTAGGACTTAGATCCATTGAAATTAAGTAGA
CTTAATTGGTTTAAAACCAGGAATACATGCAGTTGGGAAGGAAAAACAGT
AACTTGATAGGGGAAAAATTACAAGGGAGGAAATGAGGGATGGGTTTCAC
TGAAACACATACTAATACTTTATATATATATATATGTGTGTGTGTATACA
TACATACATATACATGAAAGTCTCAATAAAATATTTAAACAAAAGCTGGA
TGACTACATGGTATCTAGAGCCTCCTCCAAAACTAACAACAATGATGAAA
AAAATGGCAACTCTATGCCCAGAATCATACCAAATACCACTTCAGGCAGA
CCACAATCATAGTCAACAGCGCAATTAATATAGTTCAACAACAGGACTCC
TGCTAACAAACAGTGGATGGTCATGCCACCTTCATGTCATGGTGTTCTTT
GTGACCATCTTGTGTAACCTAGAGACCTCTTCATACTATGTTGAACCGAC
ACTGGTTCATTAACACAACTTGGTTTTTTCTGTTTACTACTGTCTGCAAT
CTCTGTACCCCAATAACGACCGACATCCCGTCCCCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_d05.g1 MSMg01no403_d05.g1 CHROMAT_FILE:
MSMg01no403_d05.g1 PHD_FILE: MSMg01no403_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:24 2005
         (424 letters)



>mm_chr10_31786534_31787357
          Length = 824

 Score =  598 bits (309), Expect = e-175
 Identities = 403/449 (89%), Gaps = 27/449 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtccctagctgagaaattatttgtaactcatggttcctgaaaagtggaaatcagttttc 60
           |||||||||  |||||||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct: 178 tgtccctag-agagaaattatttgtaactgatggttgctgaaaagtgaaaatcagttttc 236

                                                                       
Query: 61  cttgatctgtggttcctgagaggctatccaagccttagtaggacttagatccattgaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 cttgatctgtggttcctgagaggctatccaagccttagtaggacttagatccattgaaat 296

                                                                       
Query: 121 taagtagacttaattggtttaaaaccaggaatacatgcagttgggaaggaaaaacagtaa 180
           ||||||||||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||
Sbjct: 297 taagtagacttaattggtttaaaaccaggaataaatgaagttggggaggaaaatcagtaa 356

                                                                       
Query: 181 cttgataggggaaaaattacaagggaggaaatgagggatgggtttcactgaaacacatac 240
           | ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 357 cctgataggggaaaaattacaggggag-aaatgagggatgggtttcactgaaacacatac 415

                                                                       
Query: 241 taatac-tt---------------------tatatatatatatatgtgtgtgtgtataca 278
           |||||| ||                     ||||||||||||||| | | | | |||| |
Sbjct: 416 taatacattatatatatatatatatatatatatatatatatatatatatatatatatata 475

                                                                       
Query: 279 tacatacatatacatga---aagtctcaataaaatatttaaacaaaagctggatgactac 335
           ||||| |||||||||||   ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 476 tacatgcatatacatgatgaaagtctcaataaaatatttaaacaaaaactggatgactac 535

                                                                       
Query: 336 atggtatctagagcctcctccaaaactaacaacaatgatgaaaaaaatggcaactctatg 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 atggtatctagagcctcctccaaaactaacaacaatgatgaaaaaaatggcaactctatg 595

                                        
Query: 396 cccagaatcataccaaataccacttcagg 424
            ||||||||||||||||||||||||||||
Sbjct: 596 tccagaatcataccaaataccacttcagg 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)